Salvia hispanica (chia): 125224085
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Entry
125224085 CDS
T09851
Name
(RefSeq) WD repeat-containing protein ATCSA-1-like
KO
K10570
DNA excision repair protein ERCC-8
Organism
shis
Salvia hispanica (chia)
Pathway
shis03420
Nucleotide excision repair
shis04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125224085
09124 Replication and repair
03420 Nucleotide excision repair
125224085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
shis04121
]
125224085
03400 DNA repair and recombination proteins [BR:
shis03400
]
125224085
Ubiquitin system [BR:
shis04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
125224085
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
125224085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML_2
EIF3I
WDR55
NBCH_WD40
Beta-prop_RIG_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_SPT8
WDR90_beta-prop_4th
WD_LRWD1
Beta-prop_Nup120_160
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_LRRK2
Beta-prop_SCAP
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
125224085
NCBI-ProteinID:
XP_047983392
LinkDB
All DBs
Position
4:complement(524684..529319)
Genome browser
AA seq
448 aa
AA seq
DB search
MWKETRERELGNLRPNLFSTRIFKSRISSIQLSNSKEIVSSHRGAVNSLQVDLTEGRYLL
AGAADATVAVYDVQRATDHDGRGRISKHKSLFLINKQHEHGHKYAISSAIWYPVDTGLFV
TGSYDHHINVWDTNTTQVVMNFKMPGKVYRTAMSSIARSHMLIAAGTEDVQVRLCDIASG
AFAHTLSGHRDGVMSLEWSTSSEWVLVTGGCDGAIRFWDIRRAGCFRVLDQSHSQLGRRP
PLLAATNKKSSSHQSSARARPPQRKSTNGNTVKSHGVTKVPSQMKGAKQRSHPGMISSHD
RATAHYGVVTGLKVTEDGMYLLSAGSDSRLRLWDIESGCNTLVNFETARLQSSKAIQMAV
SQDSALSFVPCMTTVKVFDIWSGQTKYAFRGHYENVNCCWYNAQDQELYTGGNDRQILVW
SPPKAISTEDDESKNGEAATSDQDNWSD
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaggagactagagagagagagctcgggaaccttcgccctaatttgttcagcact
cgcattttcaaatctaggatttcgtccattcagctctccaattccaaggaaatcgtctcc
tctcatcgcggagcagtcaactcacttcaggttgatttgacagaggggcgatatctactg
gctggtgcggcggatgcaactgttgcagtttatgatgttcagcgagcaacagatcatgat
gggcgtggccgaatttcgaagcataagtcgttgtttctcatcaacaagcagcatgagcat
gggcataaatatgcgatatcatctgccatctggtatccggtcgacacggggttgtttgtt
actggttcttatgaccatcatatcaatgtttgggatacgaatactacacaagttgtaatg
aatttcaaaatgcctggaaaggtttatagaactgctatgtcttcaatagcaagatcacac
atgttaattgctgctggaaccgaagatgtccaagttcgattgtgtgatattgcttctggt
gcatttgctcacactttgtctggtcatcgcgatggagtaatgtcgttggagtggtccact
tctagcgagtgggtattggtcaccggaggatgtgacggtgcaatacgcttctgggacatc
agacgggctggatgttttcgtgttttggatcaatctcattcccagttaggaagacgtcca
cctctccttgcagcaacaaataagaaatcatcatcacatcaaagttctgcaagagcccgg
ccacctcaaagaaaatcaactaatggtaacactgtaaagtcccatggtgtcactaaggtt
cctagtcaaatgaaaggtgcaaaacagagatcacatcctggaatgatttcgagccatgat
cgtgccacagcccattatggtgtagtaactggattaaaggtgactgaagatggcatgtat
cttctaagcgcaggttctgattcaaggttgagattgtgggatatagagtcagggtgcaat
acacttgtgaactttgaaactgcacgcctacaaagtagcaaggccatacagatggctgta
tcccaagactcagctctttcttttgttccttgcatgaccactgtaaaagtctttgatatt
tggtctggccaaacaaagtacgcatttcgtggccactatgaaaatgtgaactgctgttgg
tataatgcacaagatcaggagttgtatactggtggcaatgataggcaaattcttgtctgg
tctccacccaaggccatttccactgaagatgatgaatcgaagaacggggaggctgccacc
agtgaccaggataactggagtgattga
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