KEGG   Salvia hispanica (chia): 125224240
Entry
125224240         CDS       T09851                                 
Name
(RefSeq) DNA-directed RNA polymerases II and IV subunit 5A-like
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
shis  Salvia hispanica (chia)
Pathway
shis03020  RNA polymerase
shis03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:shis00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    125224240
  09124 Replication and repair
   03420 Nucleotide excision repair
    125224240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:shis03021]
    125224240
   03400 DNA repair and recombination proteins [BR:shis03400]
    125224240
Transcription machinery [BR:shis03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     125224240
  RNA polymerase III system
   RNA polymerase III
     125224240
  RNA polymerase I system
   RNA polymerase I
     125224240
DNA repair and recombination proteins [BR:shis03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      125224240
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N Mrr_cat PK_Tyr_Ser-Thr MutS_I NA-iREase1
Other DBs
NCBI-GeneID: 125224240
NCBI-ProteinID: XP_047983564
LinkDB
Position
4:23047410..23049873
AA seq 205 aa
MVLPEEEVRRLFKAMKTVLQMLRDRGYVVTDDEIAMTKEGFTAKYGDNMKREDLMLVKDK
RDSGEQIYVFFPEDAKVGATTIRTLISRMHDDNVTRAILVSQQALTPFANKMIKEVAKKF
QVEVFQEAELLVNIHHHELVPPHQVLTAEEKTALLARYTVKETQLPRIQVTDPVARYHGL
KSGDVVKIIRPSETAGRYITYRYAF
NT seq 618 nt   +upstreamnt  +downstreamnt
atggtgctgcctgaggaggaggtgaggcggttgttcaaagccatgaaaacggtgctgcaa
atgctgagggacaggggttatgtggtgactgatgatgagattgcgatgaccaaggaagga
ttcactgccaagtatggtgacaatatgaagagagaggaccttatgcttgtcaaagacaag
cgtgacagtggagaacagatatatgtgttctttcctgaagatgccaaggttggagctacg
acaataaggactttgatcagtcgaatgcacgatgacaatgttactcgggccatcctagtt
tcacagcaggcgttgactccttttgctaataaaatgataaaggaagtagccaagaaattt
caggtggaagttttccaggaggctgagttgctagtcaacatccaccatcacgagcttgtt
cccccgcatcaagtcctcacggctgaagaaaagacagctctgcttgcaagatacactgtc
aaagaaactcagctccctcgtattcaggtaactgaccctgtcgccagatatcacgggctg
aaaagtggggatgtcgtgaagatcatccgccctagtgaaactgccggaagatacatcact
tacagatacgcattttga

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