KEGG   Salvia hispanica (chia): 125224316
Entry
125224316         CDS       T09851                                 
Name
(RefSeq) suppressor of mec-8 and unc-52 protein homolog 1
  KO
K13111  WD40 repeat-containing protein SMU1
Organism
shis  Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:shis00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:shis03041]
    125224316
Spliceosome [BR:shis03041]
 Complex B
  Other components
   Complex B specific factors
    125224316
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st EIF3I WDR55 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 Beta-prop_EML WD40_MABP1-WDR62_2nd LisH_TPL Beta-prop_WDR90_POC16_2nd NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_TEP1_C WDR90_beta-prop_4th Beta-prop_DCAF4 Beta-prop_IFT122_1st Beta-prop_NWD2_C Ge1_WD40 Beta-prop_Nup120_160 Beta-prop_NUP159_NUP214 Beta-prop_EIPR1 Beta-prop_IFT140_1st Beta-prop_SCAP WD40_MABP1-WDR62_1st Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_WDR35_TULP_N Beta-prop_WDR75_2nd Beta-prop_WDR19_1st Beta-prop_VPS8 Beta-prop_HPS5 Mala_s_1-like VPS8_N DUF7165 Beta-prop_LRRK2 Beta-prop_IFT122_2nd WD40_like zf_topless 7TMR-HDED Beta-prop_IP5PC_F
Other DBs
NCBI-GeneID: 125224316
NCBI-ProteinID: XP_047983657
LinkDB
Position
4:57180242..57185611
AA seq 514 aa
MSSTLEIEARDVIKIVLQFCKENSLHQTFQTLQNECQVSLNTVDSHETFVADINSGRWDA
ILPQVAQLKLPRKTLEDLYEQIVLEMIELREIDTARAILRQTQVMGVMKQEEPERYLRLE
HLLVRTYFDPNEVYQDSTKEKRRAQIAQAVAAEVSVVPPSRLMALIGQALKWQQHQGLLP
PGTQFDLFRGTAAMKQDVEDMYPTNLGHTIKFGKNSHPECARFSPDGQFLVSCSVDGFIE
VWDHISGKLKKDLQYQADETFMMHDDAVLCVDFSRDSEMIASGSQDGKIKVWRIRTGQCL
RRLERAHGEGVTSVSFSRDGTQLLSASFDTTARIHGMKSGKILKEFRGHSSYVNDAIFTA
DGSRIITASSDCTVKVWDVKTTDCLQTFKPPPPLRGGDASVNSVHLFPKNTDHIVVCNKT
SAIYIMTLQGQVVKSFSSGKREGGDFMAACVSTKGEWIYCVGEDRNLYCFSYQSGKLEHL
MKVHEKDVIGITHHPHINLIATYGEDCTMKLWKP
NT seq 1545 nt   +upstreamnt  +downstreamnt
atgtcttcgacgctagaaatcgaagctcgagatgttatcaagattgtactacaattctgc
aaagagaattctctgcatcagacttttcaaacactgcagaacgagtgtcaggtttcgcta
aatacagtggacagccatgagacttttgttgctgatattaatagtgggaggtgggatgca
atcttgccacaagttgcccaacttaaacttccaaggaaaacattagaagatctctatgag
cagattgttctggaaatgattgaacttcgggagattgatactgcccgtgcaattttaaga
caaactcaggtgatgggcgtcatgaaacaggaggaaccagagagatacttacgacttgaa
catctactggttcggacttactttgacccgaatgaggtgtatcaagattctacaaaggag
aaaagacgtgctcaaatagctcaagctgttgcagctgaagtttcagtagttccaccttca
cggttgatggctttgatcggccaggctttaaaatggcagcagcatcaaggtttactgcca
cctggaacacaatttgacctgttccgaggtactgctgctatgaaacaagatgtagaagat
atgtacccgacgaaccttgggcacactattaagttcgggaagaatagtcatccagagtgt
gctcggttttctcctgatggtcaattccttgtttcttgttcagttgatggatttattgag
gtctgggaccatataagtgggaaactgaagaaggatctccagtaccaggctgatgaaaca
tttatgatgcatgatgatgctgtcctatgtgttgattttagtagggactctgagatgatt
gcctccgggtcacaagatggaaaaataaaggtttggcgtatccgaactggtcagtgcttg
cgtcgacttgagcgtgcacatggtgaaggtgtcactagtgttagcttttctcgagacgga
acccaattgttgagtgcatcatttgacaccactgctagaattcatggcatgaaatccggg
aagattttgaaagagttccgtggtcattcatcatatgttaatgatgccatcttcacagct
gatggttctcgtatcataactgcatccagtgattgcactgtgaaagtttgggatgtgaag
actacagattgtttacagacatttaagccaccacctccactacggggaggtgatgcgtct
gtgaattctgttcatcttttccccaaaaatacagatcacatagttgtctgcaacaagaca
tcggcaatatacatcatgacactccaagggcaggtggtaaaaagtttttcatccggtaaa
agagaaggtggagattttatggcagcttgtgtatcaaccaaaggagagtggatttattgt
gtcggcgaagacagaaatctatattgcttcagttatcaatctggcaagctagagcatcta
atgaaggtacatgagaaggatgtgatcggcatcactcaccatccccacataaacctcatc
gccacctatggcgaagactgcaccatgaaattatggaagccgtga

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