Salvia hispanica (chia): 125224351
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Entry
125224351 CDS
T09851
Name
(RefSeq) syndetin-like
KO
K23288
syndetin
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shis04131
]
125224351
Membrane trafficking [BR:
shis04131
]
Protein recycling
Others
EARP complex
125224351
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Syndetin_C
Vps54_N
TetR_C_30
Motif
Other DBs
NCBI-GeneID:
125224351
NCBI-ProteinID:
XP_047983693
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All DBs
Position
4:complement(47148439..47156094)
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AA seq
866 aa
AA seq
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MHILVFMNILSKCLPSHSQAFQVLPEYLQLLDSLSDLWAVQEMSLYVEVWLGKTLQKLDS
LLLEVCQDFKEDGYLTVIDAYALIGDVPGLAEKIQSFFMQEVLSESHSALKTILQEDVEN
PNPQITRLTYSDLCTQIPESKFRQCLQATLAVLFKLMCSYYIIINFKLEDKVSSCHNPSG
DEHGMLSGVSESTAQKVSSTFLAEEGSVTASTERGSRLSSVEVSSASVTDTEGTHGPILN
DHPTDGGRDDGSEASSSGSPWFFLRKDAVTCVSLALQRGCRNLWQLITSRISVLLSSSAA
SSTSIHQFLRNYEDLSIFILAGEAFCGTEAIEFRQKVKSICEGYFVAFHRQSIYALKMVL
ERETWQILPPDTVQVVSFPGLVGDGAALLVSSVCSPRAKLLHDSKTVGVASGSKKGGFSY
WLENGKLFLPKVSGSSEEHSNSFQSNDLATQGSENTNMIPRQTKSSFDFDANHVNGTIPE
EENEDLHADFIDEDSQLPSRITKPGHSRHSSLRGNKDDSMAQTGSSLSVLRSMDKYARLM
QKLEIVNVELYKGICQLFEIFFYFVFETFCEHNTPTIAKRTNGSIPHKVKTAIARISQEC
DQWIKHQPVSTSSNPSLTHVDVTPTSPPSHVNHSSFGLKERCAGADTISLVAQLLHRSKT
HLPSMLPRKYGALVEDFYFHMVDAVPDLTQLIHRTTAKSLLHINGYADRIASSKWEVKEL
GMEHNGYVDLLLGEFKHYKTRIAHGGIRQEVQDLLLEYGVENVAETLIEGLSRVKRCTDE
GRALMSLDLQVLINGLKHFVSIDVQPKLQIVETFIKAYYLPETEYVHWSRAHPEYSKSQI
VGLINLVATMKGWKRKTRLEIIEKIE
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgcatattttggtattcatgaatattctttctaaatgcttaccttcacattctcaggct
ttccaagtactgccagagtatttacaacttttagatagtttatcagacctttgggctgtg
caagagatgagcctttatgttgaggtttggttggggaagactcttcagaagttggattca
cttctattagaagtgtgccaggacttcaaagaggatggctatctcactgtgattgatgca
tatgctttaattggtgatgttcctggtctagctgaaaaaatacagagcttcttcatgcag
gaggttctctctgaaagtcactcagccttgaagaccattctgcaagaggacgttgaaaat
cccaatccccaaattaccaggttgacatacagtgatttgtgcacccaaataccagagtca
aagtttaggcagtgtttacaagcaacactagctgttctctttaagctgatgtgctcttac
tacataattatcaacttcaaacttgaagacaaagtgtcatcatgccataacccaagtggt
gatgaacatggtatgctatctggggtctctgagagtactgcccaaaaagtttcttctact
tttctggcagaagaaggctcagttactgcatcaactgagagaggatctcgtttgtcatca
gtggaagtaagttcggcatctgtaacagatactgaaggaacccatggccctatactcaac
gatcatccaactgacgggggaagagatgatggaagtgaagcatcaagtagcgggtcccca
tggttctttctgcgaaaagatgctgtgacgtgtgtttcacttgccttacaaagaggatgt
aggaacctctggcagcttatcacaagccgtatatcagttttgctttcatcttcagcagct
tcttctactagcattcatcaattcttaagaaactatgaagatctaagtatattcattttg
gctggggaagctttttgtgggactgaggctattgagtttcgccagaaggttaaatccatt
tgcgaaggctattttgttgcattccatcgtcagagtatttacgccttaaagatggtcctg
gagagggaaacttggcagattttgccaccagacacagtccaagtagttagttttccagga
ttagttggtgatggagcagctctccttgtttcatctgtctgttctccccgtgcaaaattg
ctacatgacagtaaaacagttggagtagctagtgggtcaaagaagggtggattttcatat
tggcttgaaaatggcaagctgtttttgccaaaagtgagtggcagttctgaggagcattcc
aactccttccagtccaacgatttggccacacaaggatcagaaaatactaatatgataccc
aggcaaactaaatcttcctttgactttgacgcaaaccatgttaatgggactatccctgaa
gaagaaaatgaggatctccatgcagattttattgatgaagatagtcagcttccgagtcgt
attaccaaacccggtcattcaaggcatagctcgttacgtgggaacaaggatgattcgatg
gcacaaacaggatcctcccttagcgtcctgagatcgatggacaaatacgcacggttgatg
cagaaattagagattgtcaatgttgagttgtataagggaatttgccaattgtttgagatc
tttttctactttgtgtttgagacattctgtgagcataatactccaactattgctaaacgc
accaatggttctattcctcacaaggtaaagactgcaatagcaagaatttcacaagagtgt
gaccagtggataaaacatcaaccagtatcaacatcttcaaatccatcattaacacatgtg
gatgttacccctaccagtcctcccagtcacgtgaatcattcgtctttcggactgaaggaa
agatgtgctggggctgacactatatctcttgttgctcaattattgcatagatccaaaacg
catctgccgtcgatgcttccacgcaaatatggagcactagtggaggacttctattttcac
atggttgatgctgtgcctgatcttactcagctcattcatagaacaacggcaaaatcgcta
ctgcatatcaatgggtatgctgatcgtattgccagttctaaatgggaggtgaaagagctt
ggaatggagcataatgggtatgttgatttattattgggtgaatttaagcactacaaaaca
aggattgctcacgggggtattcggcaagaggttcaagatctcctcctagaatatggagtt
gaaaatgttgctgaaactctgatcgagggcctatctagggtgaagaggtgtactgatgaa
ggacgggcactcatgtcactggatcttcaggttctaataaatggcctaaagcattttgtc
tcaattgatgtacagccaaaattgcagatagtagaaactttcatcaaggcatactacctt
ccagaaaccgagtatgtccactggtcgcgtgctcatccggaatatagtaagagtcaaata
gtggggcttatcaacctggtggcaaccatgaaaggctggaaaagaaaaaccaggttggag
atcatagagaagatagaatga
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