Salvia hispanica (chia): 125224353
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Entry
125224353 CDS
T09851
Name
(RefSeq) RNA polymerase II C-terminal domain phosphatase-like 3
KO
K18999
RNA polymerase II C-terminal domain phosphatase-like 3/4 [EC:
3.1.3.16
]
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
shis01009
]
125224353
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125224353
Enzymes [BR:
shis01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
125224353
Protein phosphatases and associated proteins [BR:
shis01009
]
HAD phosphatases
Fcp/Scp phosphatases
125224353
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
125224353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NIF
BRCT
PTCB-BRCT
RTT107_BRCT_5
Phage_tube_C
BRCT_2
Motif
Other DBs
NCBI-GeneID:
125224353
NCBI-ProteinID:
XP_047983695
LinkDB
All DBs
Position
4:complement(8690895..8696302)
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AA seq
1122 aa
AA seq
DB search
MRDPYKYQISSYPGLYNLAWAQAVNNKPPGDVFVTMEDDSSNGHSKVVTDDDDGELEEGE
IDLDSELHDSDVKVNKEDRSKRVDVDLIMEELVNLKAPDAQNSFDAFFPRLEATAIKLHK
IVLDGPFPEKHTLVQLLLQTLHSVFSSMTLALNQQNEAILLRLLAQLTSLRPPLFSSSQL
KEVEAIRLSLESSDNSLNNGVTGMKQVREGFNTTNLHVLFENADNRPDYVRKHGQEPVPD
GSVDQRGQSFPLQCSKPALVNLSRKGLPLLDLHKDHDVDSLPSPTRDHPATFPFDKGLIL
EQGLLKPEWPLPRQTLPRGNPALHPYETDTVKDVSGYQKKFGQGSFFVNDKFPSPTPSGE
GDNKGDGEACGEVSSSVNHNVNPAVNSLMLGQPALSSAAARDVVAGPEISNVQMIDTANS
FRNPVLEPSAKSRDPRLRMANSDAGPTNLSQSLSQSLPSMGSDESKSTYVGFMSSRKQKV
CEELVLNGPALKRRKNESLIPEVTLPLTTTISTSQVLTPPVLPISSLSKSALTCQTEILP
VKSFSLSSPIHSLLRDIAGNPSIWMSILKMEHKTSDDNNNATQMPNSNSILGVAPSTSGV
LPSSSILGQKPAGIVPCQPVSAEEPGKVRMKARDPRRILHNNTPQNGVSAVSDLPKTYPS
SSSVMMGNMSAQGQEDQMEKVVPSGSVKPPDITMKFTNNLRNIADIMSVSQANTPPPDLP
QSVLSQPLQSHQAGPESKMVAYNSVNFRSGSNSTSDAAISIPPRPLNANTWSDVEHLFDG
FDDQQKAAIQRERARRIKEQNKLFADRKLCLVLDLDHTLLNSAKFTEVDPLHDEILRKKE
EQDRVKSQRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLCTMGNKYYATEMAKLLDP
KGELFSGRVISRGDDGEPFDSDDRVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKPNLIA
VERYIYFPCSRRQFGLSGPSLLEIDHDERPEDGTLASSLAVIEKIHGAFFAHDSLEEGDV
RSILACEQRKILAGCRIVFSRMFPVGEKNPQMHPLWQTAEQFGAVCTKQIDEQVTHVVAN
SLGTNKVNSALARGTFVVHPGWVEASALLYRRANEHDFAIKQ
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgagagatccttacaagtaccagatttcttcctatccgggtttatataatttggcgtgg
gcgcaggctgtaaacaataagccaccgggtgacgtttttgtcacgatggaggatgatagt
agtaatggtcatagtaaggttgtgactgacgatgatgatggtgagctggaagagggcgag
attgatttggattctgagttgcatgattcggatgttaaggttaacaaggaagataggagc
aaacgtgttgatgttgatctaataatggaagagcttgtcaatctgaaagcgcctgatgcc
caaaactcttttgatgcattctttccacgcttggaggccacagcaatcaagttgcacaag
attgtgttggacggtccttttcctgagaaacacactcttgttcagctcttacttcagact
cttcattcggttttttcttcaatgactctagcactcaaccaacagaatgaagcaattctg
ttgaggttgctagctcaattaacaagcttgaggccacctcttttttcttcttcgcagttg
aaagaggtggaggctattaggttgtctcttgagtcatctgataattccttgaacaatggt
gtaactggaatgaaacaagtaagagaggggtttaatacaaccaatttacatgtgttgttt
gagaatgccgataacaggcctgattacgtaaggaaacatggacaagaacctgtgcctgat
ggttcagtggatcaacgtgggcaaagctttcccttacagtgttcaaaaccagcgctagtt
aacctgagccgcaaaggtcttcctctgctagatcttcacaaagatcatgatgtggacagt
cttccttctcctacacgagaccatcctgcaactttcccctttgataagggattaatcttg
gagcaagggctgctgaaacctgagtggcctcttcctagacaaacacttcctcgaggaaat
cccgctctgcatccttatgaaactgatactgtcaaagatgtctccggttatcagaaaaaa
tttggacagggttccttttttgtgaatgataagtttccaagtccaactccttcaggggag
ggtgataataaaggagacggtgaagcctgtggggaggtcagtagttctgttaaccacaat
gttaaccctgctgtgaattccttgatgctagggcagccagcactttcttctgctgctgcc
agagatgttgtagcaggtcctgagattagcaatgttcagatgattgatactgcaaatagt
ttccgaaatcctgtgttagagccctctgcaaaaagtagggaccctaggctccgaatggcc
aattctgatgcaggtccaacaaatctcagtcagagtctcagtcagagtctcccctcaatg
ggaagtgatgaatccaaatcgacgtatgttggttttatgagttcgaggaagcagaaggta
tgtgaggagctagttttgaatggtcccgcgctaaaacggcgaaaaaatgaatcattgatt
ccagaagtaaccctgccactcacgactacaatctcaacctctcaagttctgactccaccc
gtgctacccattagcagtctctctaaatcagcattaacctgtcaaactgaaattctgcca
gtgaaaagtttcagtttgtcttctcctattcattctttattaagagatatagctggcaat
ccatctatatggatgagcatactcaaaatggaacataagacgtctgacgataacaataat
gcaactcaaatgccaaactcgaattccatactgggagtagctccatcaacatctggtgtc
ctgccttcctcctcaatacttggccagaaaccagcgggaatagttccttgccagccagtc
tctgcggaggaacctggaaaagttcgaatgaaggctcgtgacccacgtcgtattctacat
aataatacacctcagaatggtgtgagtgcagtatctgatcttccaaaaacatatccttca
tcttcttcagtaatgatgggtaacatgagtgcccaagggcaagaagatcaaatggagaag
gtagttccttccggaagtgtgaaaccaccagatattaccatgaagtttaccaataatctg
aggaacattgctgatatcatgtctgtatcgcaagcaaatacacctccaccagatcttcct
cagagtgtattgtcacagccgttacaaagtcatcaagctggaccagagagtaagatggta
gcttacaattcagtcaacttcagatctggaagtaactcaacatccgatgcagctatttct
atcccccctcgaccacttaatgcaaatacttggagtgatgttgagcatttatttgatggc
tttgatgaccagcaaaaggctgctatccagagagaaagggctaggaggattaaagaacag
aataaactgtttgctgatcgaaagctatgtcttgtcttggatcttgatcatactctccta
aattcagccaagtttacagaggttgaccctctgcatgatgagattctgagaaagaaggag
gaacaagatcgggtaaagtcccaaaggcatctatttcggtttccccatatgggaatgtgg
acaaagttgcgtcctgggatatggaatttcttggagaaggcaagcaagctctatgaactt
catctctgcaccatgggaaacaaatattatgccactgagatggcaaaattgcttgatcca
aaaggggaattgttttctggaagagttatctcgaggggcgatgatggtgaaccatttgat
agtgatgatagagttcccaagagtaaggatttggagggtgttttgggcatggagtcagcg
gtcgtaattattgatgattctgtacgagtgtggcctcataacaaaccaaacttgattgct
gtggaacggtatatatattttccgtgtagtagacgtcaatttgggctatcaggcccttct
cttctggagattgatcatgatgagagaccagaagatgggactctggcttcttctctggcg
gttatagaaaaaatacatggagcattttttgcacacgattcattagaagaaggtgatgtt
agaagtatcttagcttgtgaacaaaggaaaattctagcgggctgccgcattgttttcagc
cgaatgttcccagttggtgaaaagaatcctcagatgcatccgctgtggcagacggctgag
caattcggtgcagtgtgcacaaagcagatagatgagcaggtgacacatgtggttgcgaat
tcacttgggacgaacaaggtgaactcggcactggctagaggaacatttgtggtccacccg
ggatgggtcgaagcatcagctctgctgtatcgaagagctaatgagcatgattttgctatt
aaacaataa
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