Salvia hispanica (chia): 125224468
Help
Entry
125224468 CDS
T09851
Name
(RefSeq) probable E3 ubiquitin-protein ligase RHC1A
KO
K11982
E3 ubiquitin-protein ligase RNF115/126 [EC:
2.3.2.27
]
Organism
shis
Salvia hispanica (chia)
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
shis04131
]
125224468
04121 Ubiquitin system [BR:
shis04121
]
125224468
Enzymes [BR:
shis01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125224468
Membrane trafficking [BR:
shis04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Rab associated proteins
125224468
Ubiquitin system [BR:
shis04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125224468
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
Zn_ribbon_19
zf-C3HC4_2
zf-RING_11
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_3
zf-RING_5
Zn_ribbon_6
zf-Nse
CxC4
zf-RING_16
zf-ANAPC11
HypA
VPS18_RING_C
Motif
Other DBs
NCBI-GeneID:
125224468
NCBI-ProteinID:
XP_047983830
LinkDB
All DBs
Position
4:complement(49731310..49733528)
Genome browser
AA seq
325 aa
AA seq
DB search
MSSGGNTHWCHQCSQPVRPRGRNLVCPYCDGGFIQELAEVMGAHAGDGSGLGFMAPQQDP
RFGIMDAFAALMRHRMIGRDPNFDVRGRPAMLSERSVGIGQRPPGQLLILHGQSPVAVDP
FDFFFSDGHGVGQRRADFDDIFMGHGLQELIEQLSMNDRRGPPPAPRSAIDAMPTIKISQ
RHLNTDAHCPVCQDKFELGTRARQMPCDHIYHSDCIVPWLVEHNSCPVCRVELPPLGSAN
ARSNLNQRAANTSSVSGGGGGGSGSGGSSSRRDSNSQSQGRWNPFSFLWPSNSSNQNTQR
HSGTEGNSATAPNEEHGRMRWPFDY
NT seq
978 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagtggtggaaacactcattggtgccaccagtgcagtcagcctgtacgacctcgt
ggccgtaacttggtttgcccgtactgtgatggaggctttatacaagagctggccgaagtt
atgggtgctcacgcgggtgatggttccggacttggattcatggctccccagcaagatccg
agatttggtattatggatgcatttgctgccctaatgaggcacaggatgataggaagggac
ccaaactttgatgttagaggacgacctgccatgcttagtgaacgaagtgtgggtattggt
caaaggcctcctggacaattattgatattacatggccaatctccagttgctgtcgatcca
tttgatttcttttttagcgatggacatggagtggggcaaagacgagctgattttgatgat
atctttatggggcatggattacaggaattgatagagcagctgagtatgaatgataggcga
ggtcctcctccagcacctcgttctgcaattgatgccatgcctaccatcaagatttcccaa
aggcatctcaatacagatgctcactgcccagtgtgtcaagataagtttgaattgggcaca
agagctagacagatgccatgtgatcatatttaccattcagattgtattgtgccttggcta
gtcgaacataattcatgccctgtttgtcgtgttgagcttcctccactaggttctgcaaat
gctcggtctaacttgaatcagagagcagcgaacactagtagtgtgagtggtggtggtggt
ggtggtagtggtagtggcggcagcagcagcagaagggacagtaactctcagagtcaggga
aggtggaatccattttctttcctgtggccttcaaactcatcaaatcaaaacactcaacgc
cactcaggaaccgaaggaaacagtgccacggctccaaatgaggagcatggcaggatgcgc
tggccttttgactattga
DBGET
integrated database retrieval system
