Salvia hispanica (chia): 125224474
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Entry
125224474 CDS
T09851
Name
(RefSeq) transcription initiation factor TFIID subunit 4b-like
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
shis
Salvia hispanica (chia)
Pathway
shis03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
125224474
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shis03021
]
125224474
03036 Chromosome and associated proteins [BR:
shis03036
]
125224474
Transcription machinery [BR:
shis03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
125224474
Coactivators
SAGA/TFTC/STAGA complex
125224474
Chromosome and associated proteins [BR:
shis03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
125224474
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
RST
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
125224474
NCBI-ProteinID:
XP_047983834
LinkDB
All DBs
Position
4:complement(457481..461471)
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AA seq
636 aa
AA seq
DB search
MDDIAIFLDEDEDETAYSAADVEAYAAGFGRVLEGDTSTSQQLCDRNAGSSATSDHAGNA
TSQSGQDIMSARDNSSHAASSIIASPHMRSSCQQPGTAFKLKNMVPVGRLVSILQPQLDQ
DRALILQTLLRNLKRKEIPVDVVLQRMRSLIGDKMLRPVLLNLQGEGATYSQIAALNQVQ
SAQLPTDVSISNNEAAKSCEAEREADLHGAQVGQMSTSTDNKQQHMQSPPGSFSTHISSW
RSRQLSTTTGNMANMNPNIATLQIQAQRPSSTSEKQKATVSPSMTHSSTRLHPLTATVGT
QNESNASPEKPPLAGQKKPMTAYGSLPPSSKKQKVSESLADQFQSIEHLNDVTAISGINL
SEEEEQLFSGSKKDSRVSEAARQIEEKLILQKIPLQKKMIEIMTKSGLKNMTSWQLQSLE
RCLSLAVEERMHRILSTAIRFSKQRVDIEKTRHKITVTSDVQKEVMAINRKAREEWEKKQ
AENEKSQKLKKLNSKESKYIDADKKDDKHEKSTKVNMDEANKMRAKAANVAAGAATGIND
ITSRWKLMIEAKQKEGRSHTSSGPHTNRDVRQKPLASSTNGDMGRKPLASSTISTRDQAS
IPPQVARTISVKDVLAVLEREPQMSKSTLLYRLYLS
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atggacgacatcgcgatattcctcgatgaagacgaggatgaaacagcgtattccgcggcg
gacgtggaggcttacgcagcaggatttggcagagtattagaaggggatacttcgacatcg
cagcagctctgtgatcgaaatgccggaagcagtgctacttccgatcatgctggcaatgct
acttcccaaagcgggcaagatattatgtctgcgagggataactcctcccatgccgcctcc
tcaataattgctagtccacacatgagaagtagctgtcaacagcccggtaccgcattcaaa
ttgaaaaatatggttcccgttggcagactggtttccatcctacaaccccaacttgaccag
gacagagctttgatacttcagactcttttgcggaatctaaagagaaaggagattcctgta
gatgtagttttacagcgtatgagaagtcttattggagacaagatgttacgaccggtccta
ctcaatctgcagggtgagggtgctacttactcacagattgctgctctcaatcaagttcaa
tcagcacaacttccaacagatgtgagcataagcaacaatgaagcagcaaaatcatgtgag
gcggagagggaagcagatttgcatggagcacaagtaggccagatgtcaacctccacggat
aataagcagcagcatatgcaatccccaccgggatctttttcaacacatataagttcctgg
agaagtaggcagttatccacaacaactggaaatatggcaaacatgaatcccaacatagcg
acactacaaattcaagcccagcggccatcatccaccagcgaaaagcagaaagctactgtt
tctccatccatgactcattcaagcactcggctgcatcctctgaccgctactgttggtact
caaaatgaatcaaatgcttcccccgaaaagcctcctctggcaggccagaagaagccaatg
acagcatatggttctttacctccatcaagtaagaagcaaaaagtgtcggaatcccttgct
gatcaatttcaaagcattgagcatctcaacgatgttactgcaataagcggaatcaatctg
agtgaggaggaggaacaactcttttcaggatccaagaaagacagccgggtttcagaggcg
gctcgacagatagaagaaaagctgatattgcagaagattccacttcagaaaaaaatgatt
gagataatgacgaaatctggtttgaagaatatgacttcctggcagttgcaaagtctggag
cgatgcttatccttggccgtggaagagagaatgcacagaatcctatcaactgctatcaga
ttttcgaaacagcgagtcgatatagagaagacaaggcacaagatcactgtcacctctgat
gttcagaaagaggtcatggccataaatcgtaaagctcgtgaagaatgggagaagaaacag
gctgaaaatgaaaagtcacagaaactgaagaaacttaatagtaaagaatctaaatatatc
gatgctgataagaaggatgataaacatgagaaatcaacaaaggttaacatggacgaagct
aacaaaatgcgcgctaaagctgcaaatgttgctgctggagctgctactggaataaacgat
attacatcaagatggaagttaatgattgaggccaagcagaaagagggcagatctcacact
tcatctggtcctcatactaacagagacgtgcgacaaaagcctctagcatcctctactaac
ggagacatgggacgaaagcctctagcatcatctacaataagcaccagggatcaagctagc
ataccaccacaggtggctcggaccatttcagttaaggatgtgcttgccgtgttagaaaga
gagcctcaaatgtcaaaatcgacactgctctaccgcttatatctgtcataa
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