Salvia hispanica (chia): 125224572
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Entry
125224572 CDS
T09851
Name
(RefSeq) BRCT domain-containing protein At4g02110-like
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
shis
Salvia hispanica (chia)
Pathway
shis03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125224572
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shis03032
]
125224572
03400 DNA repair and recombination proteins [BR:
shis03400
]
125224572
DNA replication proteins [BR:
shis03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
125224572
DNA repair and recombination proteins [BR:
shis03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
125224572
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
RTT107_BRCT_5
BRCT_2
PHD
DUF6822
Motif
Other DBs
NCBI-GeneID:
125224572
NCBI-ProteinID:
XP_047983948
LinkDB
All DBs
Position
4:49894168..49900953
Genome browser
AA seq
1451 aa
AA seq
DB search
MLGSSAYDDDPSKAFVGIRFVLFGFDAVREEEMRSMLLEGGGVDTVNYGPYCNHVIVDKL
VFDDPICVAARRDGKVLVNGLWVEHSYDSGMPVDPTRVLYWPMRGLNGIPGAKSLVICLT
GYQRQNRDDVMNMVSLMGANFSKPLIANKVTHLICYKFEGEKFELAKKIGFAKLVNHLWL
ENCLKAWELLPEADYAKSGYELEMEAKAKYSEEETQDMSLVDVKKNDIINPHNIQIENTN
LHESPDQQGGSRNNGYVPAFESFANVGNTGKTRSTPRKENTSKTKSTPTKEKASTQSSPR
KETDFGKTSVSHDTHGDKLDTSYSSCSWSPAKMFSEVPFNVPDGKGNTENIEHALASTSG
SAKKSVDGGLSKLSSKSMKASLPLWSERTEINPGSPMSNVSKTGLRGGFDIPMERDLDAT
DSHGIKSPLMGSLLLPNEGQTTGLPNKMKPTVPCGSSRSPVLSHSPKTLIRGGLATKTME
TSVSRSLVDGSCRVACDMSPVKGTSCLREEVTGAFVTPSGKIQDGTGSAVDKTPLKGDVL
HLDEENVSSLPRTKKMNVSRSDSKSRRLSHSPTTGASCLREEVDAGSVLPSENIHEGTES
AGIKTPSKGSLLYLDEEQQSSLPGTKKMAVLHSGSKSTKLSRSSKVLMGSGLNTKPIEMA
GSGSSVCGTRQLAAAVPPTNITSFLQEEVGDVLHMPSERDGDGTESGGIKTPIEGASVHL
NKEQTSSLRGRKTTVSRSNSKSTKLSRSRSMLMGTVLGTKETDMPVSGTPIPASHQSAVD
ISPSNITSHLREEASLASKEALVTSTQLQERQECNDQTIKSSRGRPKKQRLPDSDGKDLS
LRRTESCTEGQEIYQSDPPDFRPQFPSTSSTVEKLDNQADLNSSKVDHSGTKSKSPKKKM
LARKTLGSKPTICKGKTTKHKGLLSSVLQNKFIGHSNGAVGVEHKENASLAEKFVTVSSN
HNEDVGDETETPECEGLKKSAEVEEPHTSKEPGKKKTKKMEAKSKVKKSAEAKKSPELPE
PTSTVDVVEKKVAEGKKRPLTKSKTNKLKDHTKEAKQDEKEAVLNNGEKVVLSGKAAKRP
SKKLKGSHDVEKENEPVTNEQPSVSCDTGAAGNSTHKLKTPLKNGRANDLTTKTEPAWFI
LSGHRLQRKEFQQVIRQLKGKVCRDSHNWSYQATHFIVPDPIRRTEKFFAAAASGSWILK
TDYLTASTEAGRFLSEEPYEWHKKCLTEDGAINLEAPRKWRLLRERTGHGAFYGMSIVIY
GECIAPPLDTLKRVVKAGDGTILATSPPYTRFLNSRVDFAIVSPGITRVDMWVQEFLRHE
IPCVLADYLVEYVCKPGYSLDKHVQYNTHAWAKSSLENLVKRVEEAVDEPKTPEENCVDD
AACQVCGSRDRGDEMLICGDESGSHGCGVGAHIDCLDPPLEAVPEEDWFCHDCCRKSSSR
SLKKRALKSKK
NT seq
4356 nt
NT seq
+upstream
nt +downstream
nt
atgctgggaagttcagcatacgatgatgacccctccaaagcatttgttgggattcgattt
gttctattcgggttcgatgcagttcgtgaagaggagatgcggtccatgcttttagaagga
gggggagttgatactgtgaattatggaccgtattgcaatcacgtgattgtcgataagctt
gtttttgatgatcccatatgtgttgctgcacgaagagatggcaaagtattggtgaacgga
ctatgggtggaacacagctatgattcaggaatgcctgttgatcctacccgtgttttgtat
tggccaatgagaggtctgaatgggattcctggagctaagtctctggttatatgcctgact
ggatatcaaagacagaatcgagatgatgtcatgaatatggtttccctgatgggtgccaat
ttttcgaaaccattgatagctaacaaggttactcatctgatatgctacaagtttgaaggg
gaaaaatttgagcttgccaagaagataggattcgcgaagctagttaaccatctctggcta
gaaaattgcctgaaggcttgggagctgcttccggaagccgattatgctaaaagtggatat
gaattggagatggaggctaaagctaaatattctgaagaagagacacaagacatgagccta
gtagatgtgaaaaagaatgacatcatcaatcctcacaatattcaaattgagaatacaaat
ttgcatgagtcacctgaccagcaggggggttctagaaacaatggttatgtgcctgcattc
gaaagttttgcaaatgttggaaataccggcaaaacccgctccactcctagaaaggagaat
accagtaaaacaaagtcaactccaaccaaagagaaggccagcacccagtcaagtcctaga
aaagagactgactttggaaaaacatcagtatctcatgatactcatggtgacaaacttgat
acatcatactcttcttgttcctggagtcctgctaaaatgttctctgaggtgccatttaat
gtgcccgatggtaaaggaaacactgaaaatattgagcatgccttagcttcaacatctgga
agtgctaagaagtctgtagatggtggcttgtccaaattaagtagtaagagtatgaaggcc
agtctccctctgtggtcagaaagaactgaaattaatccaggaagtcccatgtcaaatgta
agtaaaaccgggcttcgtggaggttttgatataccaatggagagagatctggatgcaact
gattctcatggcatcaaatcaccattgatgggaagcttgttgctcccaaatgagggacaa
accactggtttgcccaacaagatgaaaccaactgttccatgtggtagttcgagatcgcca
gttttaagccattctccaaaaactttgatcaggggtggattggctacaaaaacgatggaa
acgtcggtttctagatctttagttgatggttcatgtcgagtagcctgtgatatgtctcca
gttaaaggtactagctgtttgagggaagaagttactggtgcttttgtcacgccatcaggg
aaaatccaagatggaactggatctgctgtagataaaactcctttaaagggagatgttttg
cacctcgatgaggaaaatgtaagcagtttgcctcgtacaaagaaaatgaacgtctcacgt
agtgattcaaaatcaaggagactaagccattctccaactaccggagctagttgtttgagg
gaagaagttgatgccggttctgtcctgccatcagagaacattcatgagggaactgaatct
gctggaataaagactccttcaaagggatccttgttgtaccttgacgaggaacaacaaagc
agtttgcctggtactaagaaaatggccgttttacacagtggttcaaaatcaacaaagcta
agccgatcttcaaaggtattaatgggaagtggattgaatacaaaaccgattgaaatggca
ggttctggatcttcagtttgtggtacacgtcaattagctgctgctgttcctcccacaaat
atcactagttttttgcaggaagaagtgggcgatgttcttcacatgccgtctgagagggac
ggagatggaactgaatctggaggaataaagactcctatagagggagcctcagtgcacctt
aacaaggagcaaaccagcagtttgcgcggtaggaaaactactgtttctcgtagtaactcc
aaatcaacgaaactaagccgttctcggagcatgttaatgggaacagtattgggtacaaaa
gagacagacatgcctgtttctggaactccaatccctgcttcacatcaatcagctgttgat
atatctccatcaaatatcaccagccatttgagagaggaagcttcactggcctctaaagaa
gctttagtcacgtctactcaacttcaggaaagacaggagtgcaatgatcaaacaattaaa
tcttctcgaggaagacccaaaaagcagaggttgcctgattccgatgggaaggacctttct
ctgagaaggaccgaatcttgcaccgagggacaagaaatatatcaaagtgatccaccagat
ttcagaccccaatttccgagtacaagctctacagtagagaaactggataatcaagcggat
ttgaactcttcaaaggtagatcacagtggtaccaagtcaaaatccccaaagaaaaagatg
cttgccaggaagacattgggttccaaaccaactatctgtaaagggaaaactacaaaacac
aaaggactgctttcttctgtattgcagaacaagttcataggtcattcgaatggagcagtt
ggcgtggaacacaaagaaaatgcttctctggccgagaagtttgtcaccgtctcttcaaac
cacaatgaagatgtaggtgatgaaactgaaactccagaatgcgaagggctgaagaaatct
gcagaagtcgaagaacctcatacaagcaaggaacctggcaaaaaaaaaacaaaaaagatg
gaggcaaaatcaaaggttaagaagagcgctgaagctaaaaagtctccagagttgccagaa
ccaacatcaactgttgatgttgtagagaaaaaggtagcagagggcaagaaacgtcctttg
accaagtctaagacgaataagttgaaggatcataccaaggaggccaaacaagacgagaag
gaggctgtcttgaacaatggagaaaaggttgtgttgtctggtaaagccgctaaaagacca
tctaagaaactgaaaggttcacatgacgtggagaaggaaaatgaacctgttacaaatgaa
caaccaagtgtaagctgtgatactggagcagctggaaattctactcataaacttaaaacg
cctctaaaaaatggcagggcaaatgacctaaccaccaagactgaacctgcatggtttata
ttgagtgggcataggcttcaaagaaaggagtttcagcaggttataaggcaattaaaagga
aaagtatgcagggactctcataattggtcatatcaagcaacacatttcattgttccagat
ccaattcgaagaactgagaagttctttgcagctgctgcatctggaagctggattctcaaa
actgattatctaactgctagcaccgaggctggaaggtttttgtctgaagagccatatgaa
tggcataagaaatgcttaactgaagatggagcaatcaacttagaagctccaaggaaatgg
cgtcttctgagggagagaacaggtcatggtgcattttatggaatgagtatagtcatttat
ggagagtgcattgctcctccactggatactttgaagcgtgttgtaaaggccggagatggg
accatactcgcaacctcgcctccatacacgcgttttctaaattcaagggttgattttgcc
attgttagcccgggcattacccgtgttgacatgtgggtgcaggagtttctcagacacgag
ataccctgtgttcttgctgactatctggtggagtatgtgtgcaagcctggttattccctt
gataagcatgtgcaatacaacactcatgcttgggcgaagagttcacttgagaatctggtt
aaacgtgtggaggaggctgttgatgagcctaaaacaccagaagagaactgcgttgatgac
gcagcatgccaagtgtgtggatcgcgtgacagaggagatgagatgctcatatgtggtgat
gagagtggtagtcatggatgtggtgtcggtgcccacattgactgccttgatcctccactt
gaggctgtgccagaggaagactggttctgccatgactgctgccggaaaagtagtagccgg
agtttgaagaaacgagccttgaaatcaaagaagtga
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integrated database retrieval system
