Streptomyces huasconensis: J2N69_14520
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Entry
J2N69_14520 CDS
T07920
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
shk
Streptomyces huasconensis
Pathway
shk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J2N69_14520 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shk03400
]
J2N69_14520 (mfd)
Enzymes [BR:
shk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J2N69_14520 (mfd)
DNA repair and recombination proteins [BR:
shk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J2N69_14520 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
UFQ16110
LinkDB
All DBs
Position
complement(3233744..3237274)
Genome browser
AA seq
1176 aa
AA seq
DB search
MSLHGLLDAVVKDSALAEAVKAAADGNRTHVDLVGPPAARPFVVAALAREAGRPVLAVTA
TGREAEDLAAALRTILPPDGVVDYPSWETLPHERLSPRSDTVGRRLAVLRRLAHPRPDDP
ETGPVSVVVAPVRSVLQPQVKGLGDLEPVALRSGETTDLNTVVEALAAAAYSRVELVEKR
GEFAVRGGILDVFPPTEEHPLRVEFWGDDVEEIRYFKVADQRSLEVAEHGLWAPPCRELL
LTDDVRQRAAALAEQHPELGELLGKIAEGIAVEGMESLAPVLVDEMELLLDVMPKNSMAV
VCDPERVRTRAADLVATSQEFLQASWAATAGGGDAPIDVGAASLWGIADVRDHARDLGMM
WWSVSPFAADDELDDDTLKLGMHAPESYRGDTAKALADTKGWLADGWRTVYVTEGHGPAA
RTVEVLGGEGIAARLDGDLTELTPSLVHVSCGSIDYGFVDPALKLAVLTETDLSGQKAAG
KDGQRMPARRRKTIDPLTLEAGDYIVHEQHGVGRYIEMVQRTVQGATREYLVVEYAPAKR
GQPGDRLYIPTDQLEQITKYVGGEAPTLHRLGGADWTKTKARAKKAVKEIAADLIKLYSA
RMAAPGHAFAPDTPWQRELEDAFPYAETPDQLTTIAEVKEDMEKTVPMDRLICGDVGYGK
TEIAVRAAFKAVQDGKQVAVLVPTTLLVQQHFGTFSERYSQFPVSVKALSRFQTETESKA
TLEGLRDGSVDIVIGTHRLFSSETKFKDLGLVIVDEEQRFGVEHKEQLKKLRANVDVLTM
SATPIPRTLEMAVTGIREMSTITTPPEERHPVLTFVGPYEEKQIGAAVRRELLREGQVFY
IHNRVESIDRAAARLRDIVPEARIAIAHGQMTEQALEQVVVDFWEKKFDVLVSTTIVESG
IDISNANTLIVERGDNFGLSQLHQLRGRVGRGRERGYAYFLYPPEKPLTETAHERLATIA
QHTEMGAGMYVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVADYRASLEGGV
EEEPPLEVKIELPVDAHVPHDYAPGERLRLQAYRAIASATTEEDVKAVREELTDRYGKLP
EPVENLLLVAGLRMLARACGVGEIVLQGTNIRFAPVDLRESQELRLKRLYPGTVIKANAQ
QILVPRPKTAKVGGKPLVGRELLGWVGEFLASILGS
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgcacggtctgctcgacgctgtcgtcaaggactcggcactcgccgaggcggtc
aaggccgccgccgacggcaaccgcacccacgtcgacctggtcggcccgcccgccgcgcgc
cccttcgtggtggcggcgctggcccgcgaggccggccgtcccgtcctcgccgtgacggcc
accggccgcgaggcggaggacctggccgcggcgctgcgcacgatcctgccgccggacggt
gtcgtggactacccgtcctgggagaccctcccgcacgagcgcctctcgccccgctccgac
acggtcggccgccgcctcgccgtcctgcggcgcctcgcgcacccccgcccggacgacccc
gagaccggcccggtctccgtcgtcgtcgcgccggtccgctcggtgctccagccgcaggtc
aagggcctcggcgacctggagcccgtggccctgcgctccggtgagaccaccgacctgaac
acggtcgtcgaggcgctcgccgccgccgcgtactcccgcgtcgaactggtcgagaagcgc
ggggagttcgccgtgcgcggcggcatcctcgacgtcttcccgccgaccgaggaacacccg
ctgcgcgtcgagttctggggcgacgacgtcgaggagatccgctacttcaaggtcgccgac
cagcgctccctggaagtcgccgagcacggcctgtgggcgccgccctgccgcgagctgctg
ctcaccgacgacgtacggcagcgggccgcggccctcgccgagcagcacccggagctgggc
gagctgctcggcaagatcgccgagggcatcgcggtcgagggcatggagtccctcgccccg
gtcctggtggacgagatggagctgctgctcgacgtcatgccgaagaacagcatggcggtg
gtctgcgacccggagcgggtgcgcacccgcgcggccgacctggtggcgacgtcgcaggaa
ttcctgcaggccagctgggcggcgacggccggaggcggcgacgccccgatcgacgtgggc
gcggcgtccctgtggggcatcgcggacgtccgcgaccacgcgcgcgacctggggatgatg
tggtggtcggtgtcgccgttcgccgccgacgacgagctggacgacgacaccctcaagctc
ggcatgcacgccccggagtcctaccgcggcgacaccgcgaaggcgctggccgacaccaag
ggctggctcgccgacggctggcggaccgtctatgtcaccgagggccacggccccgccgcc
cgtaccgtcgaggtcctcggcggcgagggcatcgcggcccgcctggacggcgacctcacc
gagctgacgccgtcgctggtgcacgtctcctgcggctcgatcgactacggcttcgtcgac
cccgcgctgaagctcgccgtcctcaccgagaccgacctgtccggccagaaggcggccggc
aaggacggccagcgcatgcccgcgcgccgccgcaagacgatcgacccgctgaccctggag
gccggcgactacatcgtccacgagcagcacggcgtcggccgctacatcgagatggtgcag
cgcaccgtccagggcgccacccgcgaatacctggtcgtggagtacgcccccgccaagcgc
ggccagccaggcgaccgcctctacatccccaccgaccagctggagcagatcaccaagtac
gtcggcggcgaggcccccaccctgcaccggctgggcggcgccgactggacgaagaccaag
gcgcgcgcgaagaaggcggtcaaggagatcgccgccgacctcatcaagctgtactccgcc
cgcatggcggcccccggccacgccttcgcccccgacacgccctggcagcgcgagctggag
gacgccttcccgtacgcggagacgcccgaccagctcaccacgatcgccgaggtcaaggag
gacatggagaagacggtcccgatggaccgcctgatctgcggcgacgtcggctacggcaag
acggagatcgcggtccgcgcggccttcaaggcggtgcaggacggcaagcaggtcgccgtc
ctcgtacccaccacgctgctggtgcagcagcacttcggcacgttctccgagcggtactcg
cagttcccggtcagcgtgaaggcgctcagccgcttccagacggagaccgagtccaaggcg
acgctcgaagggctgcgggacggctcggtggacatcgtcatcggcacccaccgcctgttc
tcctccgagaccaagttcaaggacctgggcctggtcatcgtcgacgaggagcagcgcttc
ggcgtcgaacacaaggagcagctgaagaagctccgcgccaacgtcgacgtgctgaccatg
tccgcgacccccattccccgtacgctcgaaatggcggtcaccggcatccgggagatgtcg
acgatcaccacgccgcccgaggagcgccacccggtgctcaccttcgtcgggccgtacgag
gagaagcagatcggcgcggcggtccgccgcgaactgctgcgcgagggccaggtcttctac
atccacaaccgcgtcgagtcgatcgaccgcgcggcggcgcggctgcgggacatcgtgccc
gaggcccgcatcgcgatcgcccacggccagatgaccgaacaggccctggaacaggtcgtg
gtggacttctgggagaagaagttcgacgtgctcgtctcgacgacgatcgtcgagtccggc
atcgacatctccaacgccaacacgctgatcgtggagcgcggcgacaacttcggcctctct
cagctgcaccagctgcgcggccgcgtcggccgtggccgcgagcgcggctacgcgtacttc
ctctacccgccggagaagccgctgaccgagaccgcgcacgagcggctcgcgaccatcgcc
cagcacaccgagatgggcgcgggcatgtacgtggcgatgaaggacctggagatccgcggc
gccggcaacctgctcggcggcgagcagtccgggcacatcgcgggcgtcggcttcgacctg
tacgtacggatggtcggtgaggccgtggccgactaccgcgcctcgctggagggcggcgtg
gaggaggagccgccgctggaggtcaagatcgagctgccggtggacgcgcacgtcccgcat
gactacgcccccggcgagcggctgcgcctccaggcctatcgtgccatcgcctccgccacc
acggaggaggacgtcaaggccgtacgcgaggaactcaccgaccgctacggcaagttgccg
gagccggtggagaacctgctgctggtggcggggctgcggatgctggcgcgggcctgcggg
gtcggcgagatcgtcctccagggcaccaacatccgcttcgcccccgtggacctgcgggag
tcgcaggagctgcggctcaagcggctctaccccggcacggtcatcaaggcgaacgcccag
cagatcctggtgccgcgccccaagaccgcgaaggtcggcggcaagccgctggtcggccgc
gaactgctgggctgggtcggggagttcctggcgtcgatcctcgggtcgtag
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integrated database retrieval system
