Streptomyces huasconensis: J2N69_20325
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Entry
J2N69_20325 CDS
T07920
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
shk
Streptomyces huasconensis
Brite
KEGG Orthology (KO) [BR:
shk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shk03032
]
J2N69_20325 (topA)
03400 DNA repair and recombination proteins [BR:
shk03400
]
J2N69_20325 (topA)
Enzymes [BR:
shk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
J2N69_20325 (topA)
DNA replication proteins [BR:
shk03032
]
Prokaryotic type
DNA Topoisomerases
J2N69_20325 (topA)
DNA repair and recombination proteins [BR:
shk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
J2N69_20325 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
Toprim_2
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
UFQ17162
LinkDB
All DBs
Position
4446952..4449858
Genome browser
AA seq
968 aa
AA seq
DB search
MSPTSETAQGGRRLVIVESPAKAKTIKSYLGPGYVVEASVGHIRDLPNGAAEVPEKYTGE
VRRLGVDVEHDFQPVYVVNADKKAQVKKLKDLLKDSDELFLATDEDREGEAIAWHLLEVL
KPKVPVHRMVFHEITKDAIRSAVANPRELNQRMVDAQETRRILDRLYGYEVSPVLWKKVM
PRLSAGRVQSVATRLVVERERERIAFRSAEYWDLTGTFGTGRAGDASDPSQLVARLTTVD
GKRVAQGRDFNSVGQLKAGSAGTLHLDEANARALAAALQDTSFSVRSVESKPYRRSPYAP
FRTTTMQQEASRKLGFGAKATMQVAQKLYENGFITYMRTDSTTLSDTAVAAARAQVTQLY
GSDYLPDKPRTYAGKVKNAQEAHEAIRPSGDRFRTPAETGLTGDQFRLYELIWKRTVASQ
MKDATGNSVTVKIGGRASDGRDAEFSASGKTITFHGFLKAYVEGADDPNAELDDRERRLP
QVSEGDALSADEMSVDGHATKPPARYTEASLVKELEEREIGRPSTYASILGTILDRGYVF
KKGTALVPSFLSFAVVNLLEKHFGRLVDYDFTAKMEDDLDRIARGEAQAVPWLRRFYFGE
GEPSGGAADAGNGDGDHLGGLKELVTDLGAIDAREVSSFPVGDGIMLRVGRYGPYIERGE
RDSEEHQRADVPEDLAPDELTVAYAEELLAKPSGDFELGTDPISGNQIVAKDGRYGPYVT
EILPEGTPKTGKNAVKPRTASLFKSMSLDTVTLEDALKLMSLPRVVGTDAEGVEITAQNG
RYGPYLKKGTDSRSIESEEQLFTITLEEALEIYSKPKQRGRAAAKPPLKELGEDPVSGKP
VVVKDGRFGAYVTDGETNATLRAADSVEDITPERGYELLAEKRAKGPAKKTAKKAAKKAP
AKKAPAKKAPAKKAPAKKTAAKKTAATKTAAKATAKKTAAKTTATKTAAKKTTAKKAAAS
SKAAAAED
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
ttgtccccgaccagcgagaccgcacagggcggccgccgactcgtcatcgtcgagtcgcct
gccaaggcgaagacgatcaagagctacctcggccccggttacgtagtcgaggccagcgtc
gggcacatccgcgacctccccaacggcgccgcggaggtgcccgagaagtacaccggtgag
gtgcgccgcctcggcgtggacgtcgagcatgacttccagcccgtctatgtcgtcaacgcc
gacaagaaggcgcaggtcaagaagctcaaggacctcctgaaggactccgacgaactcttc
ctcgccaccgatgaggaccgcgagggcgaagccatcgcgtggcacctcctggaggtcctg
aagcccaaggtccccgtccaccggatggtcttccacgagatcaccaaggacgcgatccgc
agcgccgtcgccaacccgcgcgagctgaaccagcgcatggtcgacgcgcaggagacccgc
cgtatcctcgaccgcctctacggctacgaggtctcgccggtcctgtggaagaaggtcatg
ccgcgcctgtcggcgggccgcgtgcagtccgtggccacccgcctcgtcgtcgaacgggag
cgcgagcgcatcgccttccgctccgccgagtactgggacctgaccggcaccttcggcacc
ggccgcgccggtgacgcctccgacccctcgcagctggtcgcccgcctcaccacggtcgat
ggcaagcgcgtcgcgcagggccgcgacttcaactccgtcgggcagctcaaggcgggcagc
gcgggcaccctgcatctggacgaggcgaacgcccgcgcgctggccgcggcgctccaggac
acgagcttctccgtacgctccgtcgagtccaagccctaccgccgctcgccgtacgccccc
ttccgtacgacgacgatgcagcaggaggcgagccgcaagctcggcttcggcgcgaaggcg
accatgcaggtggcccagaagctgtacgagaacggcttcatcacctacatgcgtacggac
tccacgaccctgtccgacacggccgtggccgccgctcgcgcgcaggtcacgcagctctac
ggcagcgactacctcccggacaagccgcgcacgtacgcgggcaaggtcaagaacgcccag
gaggcgcacgaggcgatccgtccctcgggcgaccgtttccgtacgcccgccgagaccggt
ctgaccggtgaccagttccggctctacgaactgatctggaagcggaccgtcgcctcccag
atgaaggacgcgaccgggaactccgtcaccgtcaagatcggcggccgggcgagcgacggc
cgggacgccgagttcagcgcgtccggcaagaccatcaccttccacggcttcctgaaggcc
tacgtagagggcgccgacgacccgaacgccgagctggacgaccgcgagcgcaggctcccg
caggtcagtgagggcgacgcgctctccgccgacgagatgtcggtggacggccacgccacc
aagccgcccgcccgctacaccgaggcctcgctggtcaaggagctggaagagcgggagatc
ggccgcccctccacgtacgcgtcgattctcggcaccatcctcgaccgcggatacgtcttc
aagaaggggacggcactcgtgccctccttcttgtcgttcgccgtcgtcaacctgctcgag
aagcacttcgggcggctcgtcgactacgacttcaccgccaagatggaggacgacctcgac
cgcatcgcgcgcggcgaggcacaggccgtgccgtggctgcggcgcttctacttcggtgag
ggcgagccctccggaggcgccgccgacgcgggcaacggcgacggcgaccacctcggcggc
ctcaaggaactcgtcaccgacctcggcgccatcgacgcccgcgaggtgtcgtccttcccc
gtgggcgacggcatcatgctgcgcgtcggccgctacggcccctacatcgagcgcggcgag
cgcgactccgaggagcaccagcgggccgacgtgcccgaggacctggcgccggacgagctg
accgtcgcgtacgcggaggagctgctcgccaagccgagcggcgacttcgagctgggcacc
gacccgatctcgggcaaccagatcgtcgccaaggacggccgctacggcccgtacgtcacc
gagatcctccccgagggcaccccgaagaccggcaagaacgcggtcaagccgcgcacggcc
tcgctcttcaagtccatgtcgctcgacacggtcacccttgaggacgcgctcaagctgatg
tcgctgccgcgcgtcgtcggcaccgacgccgagggcgtcgagatcaccgcgcagaacggc
cggtacggcccgtatctgaagaagggcaccgactcgcgctccatcgagagcgaggagcag
ctcttcacgatcacgctggaagaggccctggagatctactccaagccgaagcagcggggc
cgcgcggccgccaagccgccgctgaaggagctcggcgaggacccggtcagcgggaagccg
gtcgtcgtcaaggacggccgcttcggggcgtacgtcacggacggcgagacgaacgcgacg
ctgcgggcggcggactcggtcgaggacatcactccggagcggggctacgaactgctcgcg
gagaagcgggccaaggggccggcgaagaagaccgccaagaaggcggcgaagaaggcaccc
gccaagaaggcacccgccaagaaggcacccgcaaagaaggcgcctgccaagaagaccgcc
gctaagaagacggctgctacgaagacggccgccaaggccaccgccaagaagacggctgcc
aagaccaccgccacgaagacggctgccaagaagacgactgccaagaaggcggccgcttcc
agtaaggccgctgctgcggaggactga
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