Streptomyces huasconensis: J2N69_21970
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Entry
J2N69_21970 CDS
T07920
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
shk
Streptomyces huasconensis
Pathway
shk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J2N69_21970 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shk03021
]
J2N69_21970 (rpoB)
03400 DNA repair and recombination proteins [BR:
shk03400
]
J2N69_21970 (rpoB)
Enzymes [BR:
shk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J2N69_21970 (rpoB)
Transcription machinery [BR:
shk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J2N69_21970 (rpoB)
DNA repair and recombination proteins [BR:
shk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J2N69_21970 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
Motif
Other DBs
NCBI-ProteinID:
UFQ17448
LinkDB
All DBs
Position
4799983..4803468
Genome browser
AA seq
1161 aa
AA seq
DB search
MAASRTASTANTNNGASTAPLRISFAKIKEPLEVPNLLALQTESFDWLLGNDAWKARVEA
ALESGQDVPTKSGLEEIFEEISPIEDFSGSMSLTFRDHRFEPPKNSIDECKERDFTFAAP
LFVTAEFTNNETGEIKSQTVFMGDFPLMTNKGTFVINGTERVVVSQLVRSPGVYFDSSID
KTSDKDIFSAKIIPSRGAWLEMEIDKRDMVGVRIDRKRKQSVTVLLKALGWTTEQILEEF
GEYESMRATLEKDHTQGQDDALLDIYRKLRPGEPPTREAAQTLLENLYFNPKRYDLAKVG
RYKVNKKLGADAPLDAGILTVEDIIATIKYLVKLHAGETETVGDSGTSIVVETDDIDHFG
NRRLRNVGELIQNQVRTGLARMERVVRERMTTQDVEAITPQTLINIRPVVASIKEFFGTS
QLSQFMDQNNPLSGLTHKRRLSALGPGGLSRERAGFEVRDVHPSHYGRMCPIETPEGPNI
GLIGSLASYGRVNAFGFVETPYRKVVDGQVTDDVDYLTADEEDRFVIAQANAPLTDDLHF
AEARVLIRRRGGEIDYVPGTDVDYMDVSPRQMVSVATAMIPFLEHDDANRALMGANMMRQ
AVPLITAEAPLVGTGMEYRCAVDAGDVIKAEKAGVVQEVSADYVTVTNDDGTYTTYRIAK
FSRSNQGTSVNQKVVVDEGARVIEGQVLADGPATEEGEMALGKNLLVAFMPWEGHNYEDA
IILSQRLVQDDVLSSIHIEEHEVDARDTKLGPEEITRDIPNVSEEVLADLDERGIIRIGA
EVVAGDILVGKVTPKGETELTPEERLLRAIFGEKAREVRDTSLKVPHGEIGKVIGVRVFD
REEGDELPPGVNQLVRVYVAQKRKITDGDKLAGRHGNKGVISKILPIEDMPFLEDGTPVD
IILNPLGVPSRMNPGQVLEIHLGWLASRGWDVSGLADEWAQRLQAIGADKVDPGTNVATP
VFDGAREDELAGLLQHTIPNRDGERMVLPSGKAQLFDGRSGEPFPDPISVGYMYILKLHH
LVDDKLHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEAYGAAYALQELLTIKSDD
VTGRVKVYEAIVKGENIPEPGIPESFKVLIKEMQSLCLNVEVLSSDGMSIEMRDTDEDVF
RAAEELGIDLSRREPSSVEEV
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcctcgcgcactgcctcgaccgcgaatacgaacaacggcgccagcaccgccccg
ctgcgcatttcctttgcaaagatcaaggagcccctcgaggttccgaaccttcttgcgctg
cagaccgagagctttgactggctgctcggcaacgacgcgtggaaggctcgtgtcgaggcg
gctcttgaaagcggacaggacgtccccaccaagtccggtctggaggagatcttcgaggag
atctccccgatcgaggacttctccgggtcgatgtccctgacgttccgcgaccaccgtttc
gagcctccgaagaactcgatcgacgagtgcaaggagcgcgacttcacgttcgcggccccg
ctcttcgtcaccgccgagttcaccaacaacgagaccggcgagatcaagtcccagacggtc
ttcatgggcgacttcccgctcatgaccaacaagggcaccttcgtcatcaacggcaccgag
cgtgtcgtcgtgtcgcagctggtccgttcgccgggcgtctacttcgattcctcgatcgac
aagacgtccgacaaggacatcttctccgccaagatcatcccgtcccggggtgcctggctg
gagatggagatcgacaagcgcgacatggtcggtgtccgcatcgaccgcaagcgcaagcag
tcggtcaccgttctgctcaaggctctcggttggacgaccgagcagatcctggaggagttc
ggcgagtacgagtccatgcgcgccaccctggagaaggaccacacccagggccaggacgac
gcgctgctcgacatctaccgcaagctccgtccgggcgagccgccgacccgtgaggccgcc
cagacgctgctggagaacctctacttcaaccccaagcgctacgacctcgcgaaggtcggc
cgctacaaggtcaacaagaagctgggtgcggacgctccgctcgacgcgggcatcctcacg
gtcgaggacatcatcgccacgatcaagtacctggtgaagctgcacgccggtgagaccgag
accgtcggtgacagcggcacgtcgatcgtcgtcgagaccgacgacatcgaccacttcggc
aaccgccgtctgcgcaacgtgggcgagctcatccagaaccaggtccgcacgggtctggct
cgtatggagcgcgtcgtccgcgagcgcatgacgacccaggacgtcgaggcgatcacgccg
cagaccctgatcaacatccggccggtcgtcgcctccatcaaggagttcttcggcaccagc
cagctgtcgcagttcatggaccagaacaacccgctgtcgggtctcacccacaagcgccgt
ctgtcggcgcttggcccgggtggtctctcccgcgagcgggccggcttcgaggtccgtgac
gtgcacccgtctcactacggccgcatgtgccccattgagacgcccgaaggcccgaacatc
ggtctgatcggttcgctcgcctcctacggccgcgtcaacgcgttcggcttcgtcgagacg
ccgtaccgcaaggtcgtcgacggccaggtcaccgacgacgtcgactacctgacggccgac
gaggaggaccgcttcgtcatcgcgcaggccaacgcgccgctgacggacgacctccacttc
gccgaggcccgcgtcctgatccgccgccgcggcggcgagatcgactacgtgcccggcacg
gatgtcgactacatggacgtctcgccgcgccagatggtgtccgtcgcgaccgcgatgatc
ccctttctggagcacgacgacgccaaccgtgccctcatgggcgcgaacatgatgcgtcag
gccgtgccgctgatcaccgccgaggcccccctcgtcggcaccggcatggagtaccgctgc
gcggtcgacgccggtgacgtgatcaaggccgagaaggcgggtgtggtccaggaggtctcc
gcggactacgtcactgtcaccaacgacgacggcacgtacaccacgtaccgcatcgccaag
ttctcccggtcgaaccagggcacctccgtcaaccagaaggttgtcgtcgacgagggcgcc
cgcgtgatcgagggccaggttctggccgacggtcccgcgaccgaagagggcgagatggcc
ctcggcaagaacctgctcgtggcgttcatgccgtgggagggtcacaactacgaggacgcg
atcatcctgtcgcagcgcctcgtgcaggacgacgtcctctcctcgatccacatcgaggag
cacgaggtcgacgcccgtgacaccaagctcggccccgaggagatcacccgggacatcccg
aacgtctccgaggaggtcctcgccgacctcgacgagcgcggcatcatccgtatcggtgcc
gaggtcgtcgccggtgacatcctcgtcggcaaggtcacgcccaagggtgagaccgagctg
acgcccgaggagcgcctgctccgcgcgatcttcggtgagaaggcgcgcgaggtgcgcgac
acctcgctgaaggtgccgcacggtgagatcggcaaggtcatcggcgtccgcgtcttcgac
cgcgaagagggcgacgagctgccgccgggcgtgaaccagctcgtccgtgtctacgtggcg
cagaagcgcaagatcaccgacggtgacaagctcgccggccgtcacggcaacaagggcgtc
atctcgaagatcctgccgatcgaggacatgcccttcctggaggacggcaccccggtcgac
atcatcctcaacccgctgggtgtcccgtcccgaatgaacccgggtcaggtcctggagatc
cacctcggctggctcgccagccgcggctgggacgtctccggcctcgcggacgagtgggcg
cagcgcctccaggccatcggtgccgacaaggtcgaccccgggacgaacgtcgccaccccc
gtcttcgacggtgcgcgtgaggacgagctggccggtctgctccagcacaccatcccgaac
cgcgacggcgagcgcatggtgctcccgtccggcaaggcacagctgttcgacggccgctcc
ggcgagccgttcccggacccgatctcggtcgggtacatgtacatcctcaagctgcaccac
ctggtcgacgacaagctccacgcccgttcgaccggcccgtactcgatgatcacgcagcag
ccgctgggtggtaaggcgcagttcggtggtcagcgcttcggtgagatggaggtgtgggcg
cttgaggcttatggcgccgcgtacgcccttcaggagctcctgacgatcaagtccgacgac
gtgaccggccgcgtgaaggtctacgaggccatcgtcaagggcgagaacatccccgagccc
ggcatccctgagtccttcaaggtgctcatcaaggaaatgcagtcgctctgcctcaacgtg
gaggtgctgtcctcggacggcatgtccatcgagatgcgcgacaccgacgaggacgtcttc
cgcgcggcggaggagctcggcatcgacctgtcccggcgcgagccgagcagcgtcgaagag
gtctga
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integrated database retrieval system
