Streptomyces huasconensis: J2N69_21975
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Entry
J2N69_21975 CDS
T07920
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
shk
Streptomyces huasconensis
Pathway
shk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
J2N69_21975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shk03021
]
J2N69_21975
03400 DNA repair and recombination proteins [BR:
shk03400
]
J2N69_21975
Enzymes [BR:
shk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
J2N69_21975
Transcription machinery [BR:
shk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
J2N69_21975
DNA repair and recombination proteins [BR:
shk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
J2N69_21975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TarH
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
UFQ17449
LinkDB
All DBs
Position
4803567..4807481
Genome browser
AA seq
1304 aa
AA seq
DB search
MLDVNFFDELRIGLATADDIRQWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITFVDEERRTRDLPSLEAHVSVERQQIENRRDSDLEARAKKLETD
LAELEAEGAKADVRRKVREGAEREMKQLRDRAQREIDRLDEVWNRFKNLKVQDLEGDELL
YRELRDRFGTYFDGSMGAAALQKRLESFDLDEEAERLREIIRTGKGQKKTRALKRLKVVS
AFLQTSNSPKGMVLDCVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGK
RVDYSARSVIVVGPQLKLHQCGLPKAMALELFKPFVMKRLVDLNHAQNIKSAKRMVERGR
TVVYDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIQIHPLVCTAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPADGRPVTMPTQDMVLGLFFLTTDEEERKVIGE
GRSFGSTAEAIMAFDARELSLQAKVDIRFPVGTIPPRGWTPPVSAEGDDFGDERAYQQGD
SFRLRTTLGRALFNELLPEDYPFVDYSVGKKQLSEIVNDLAERYPKVIVAATLDNLKAAG
FYWATRSGVTVAISDVVVPEAKKAIVKGYEEQDEKVQKQYERGLITKDERTQELIAIWTK
ATNEVAEAMNANFPKTNPIFMMVDSGARGNMMQMRQIAGMRGLVSNAKNETIPRPIKASF
REGLSVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVSQDVIIREEDCGTERGLKLK
IAVKGEDGVLRKTENVETSVYARMLAEDVVIDGKVIAPANVDLGDVLIDALVANGVEEVK
TRSVLTCESAVGTCAFCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVA
GDDITQGLPRVVELFEARTPKGVAPISEAAGRVRIEETEKTKKIVVTPDDGSDETAFPIS
KRAKVLVREGDHVEVGQPLTFGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDK
HIEIIIRQMLRRVTIIESGDAELLPGELVERSKFETENRRVVTEGGHPASGRPQLMGITK
ASLATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIPAGTGLSRYRNIRV
EPTEEAKAAMYSAVGYDDIDYSPFGTGSGQAVPLEDYDYGPYNQ
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
gtgctcgacgtcaacttcttcgacgagctgcggatcggccttgccaccgcggacgacatc
cgacagtggtcccacggcgaggtcaagaagccggagaccatcaactaccgcacgctcaag
cccgagaaggacggactcttctgcgagaagatcttcggtccgacccgggactgggagtgc
tactgcggcaagtacaagcgtgtccgcttcaagggcatcatctgtgagcgctgtggcgta
gaggtcacgcgcgccaaggtgcgccgcgagcggatgggccacatcgaactggccgctccc
gtcacccacatctggtacttcaagggcgtcccgtcgcgcctcggatacctcctcgacctc
gccccgaaggacctcgagaaggtcatctacttcgcggcgtacatgatcacgttcgtggac
gaggagcgtcgtacccgcgacctgccgtccctggaggcgcacgtctccgtcgagcgtcag
cagatcgagaaccgtcgcgactccgacctggaggcccgcgccaagaagctcgagaccgac
ctggccgagctcgaggccgagggcgccaaggccgacgtgcgccgcaaggtgcgcgaaggc
gccgagcgcgagatgaagcagctccgtgaccgcgcccagcgcgagatcgaccgtctcgac
gaggtgtggaaccgcttcaagaacctcaaggtccaggaccttgagggcgacgagctgctc
taccgcgagctgcgtgaccgcttcggcacgtacttcgacggctccatgggtgccgctgcc
ctgcagaagcgcctggagtccttcgacctcgacgaggaggccgagcgcctccgcgagatc
atccgtaccggcaagggccagaagaagacccgtgcgctcaagcgcctcaaggtcgtctcc
gcgttcctgcagaccagcaacagccccaagggcatggtgctcgactgcgtgccggttatc
ccgccggacctgcgtccgatggtgcagctggacggtggccgcttcgcgacctccgacctg
aacgacctgtaccgccgcgtgatcaaccgcaacaaccgcctgaagcggcttctcgacctc
ggcgcgcccgagatcatcgtgaacaacgagaagcgcatgctccaggaggccgtcgacgcg
ctcttcgacaacggccgtcgtggtcgcccggtcacgggtcccggcaaccgtccgctgaag
tcgctgtccgacatgctcaagggcaagcagggccgcttccgtcagaacctcctcggcaag
cgtgtggactactccgcgcgttcggtgatcgtcgtcggtccgcagctgaagctgcaccag
tgcggtctgccgaaggccatggcgctggagctcttcaagccgttcgtgatgaagcgcctg
gtcgacctgaaccacgcgcagaacatcaagagcgccaagcggatggtcgagcgcggccgc
acggtcgtgtacgacgtcctcgaagaggtcatcgccgagcacccggttctgctgaaccgt
gcgcccacgctgcaccgcctcggcatccaggccttcgagccgcagctggtcgagggcaag
gccatccagatccacccgctcgtctgcaccgcgttcaacgcggacttcgacggtgaccag
atggccgtccacctgccgctctccgcggaggcgcaggccgaggcccgcatcctgatgctg
tcctcgaacaacatcctgaagccggccgacggccgtcccgtcaccatgccgacccaggac
atggtgctgggcctgttcttcctcaccaccgacgaggaagagcgcaaggtcatcggcgag
ggccggtccttcggctccacggccgaggcgatcatggcgttcgacgcccgcgagctgtcg
ctccaggcgaaggtcgacatccgcttcccggtgggcaccatcccgccgcgcggctggacc
ccgccggtcagcgccgagggcgacgacttcggtgacgagcgtgcctaccagcagggcgac
agcttccggctgcgtacgacgctgggccgcgcgctcttcaacgagctgctgcccgaggac
taccccttcgtcgactactccgtcggcaagaagcagctctccgagatcgtcaacgacctc
gccgagcgctaccccaaggtcatcgtggcggcgacgctcgacaacctgaaggcggcgggc
ttctactgggcgacccgttccggcgtcaccgtggccatctccgacgtcgtcgtgcccgag
gccaagaaggccatcgtcaagggctacgaggagcaggacgagaaggtccagaagcagtac
gagcgcggtctgatcaccaaggacgagcgcacgcaggagctcatcgcgatctggaccaag
gcgaccaacgaggtcgccgaggcgatgaacgcgaacttccccaagaccaaccccatcttc
atgatggttgactcgggtgcccgaggaaacatgatgcagatgcggcagatcgccggtatg
cgtggtctggtgtcgaacgcgaagaacgagaccatcccgcgtccgatcaaggcctcgttc
cgtgagggcctctccgtcctcgagtacttcatctccacgcacggtgcccgtaagggtctg
gcggacacggctctgcgtaccgccgactccggttacctcacccgtcgtctggtcgacgtc
tcccaggacgtcatcattcgcgaggaggactgtggcaccgagcgcggtctgaagctcaag
atcgcggtcaagggcgaggacggcgtgctccgcaagacggagaacgtcgagacctcggtg
tacgcccgcatgctggccgaggacgtcgtcatcgacggcaaggtcatcgcgccggccaac
gtcgacctcggtgacgtgctcatcgacgccctggtcgccaacggcgtcgaggaggtcaag
acccgctcggtcctgacctgtgagtcggcggtcggcacctgtgccttctgctacggccgc
tcgctcgccaccggcaagctggtcgacatcggtgaggcggtcggcatcatcgccgcccag
tccatcggtgagcccggtacccagctgacgatgcgtaccttccacaccggtggtgtggcc
ggtgacgacatcacccagggtctgccccgtgtcgtcgagctcttcgaggctcgtacgccg
aagggtgtcgccccgatctccgaggccgcgggccgtgtccgcatcgaggagaccgagaag
accaagaagatcgtcgtcaccccggacgacggcagcgacgagacggcgttcccgatctcg
aagcgtgccaaggtcctggtgcgcgagggtgaccacgtcgaggtgggccagccgctcacc
ttcggtgccaccaacccgcacgacgtgctgcgcatcctcggtcagcgcgcggtccaggtc
cacctggtcggcgaagtccagaaggtctacaactcgcagggcgtgtcgatccacgacaag
cacatcgagatcatcatccggcagatgctgcgccgcgtgacgatcatcgagtccggcgac
gcggagctgctgccgggcgagctggtcgagcgttcgaagttcgagaccgagaaccgtcgt
gtggtcaccgagggcggtcaccccgcctccggccgtccgcagctgatgggtatcaccaag
gcctcgctggcgacggagtcgtggctgtccgcggcctccttccaggagacgaccagggtc
ctgacggacgcggcgatcaacgccaagtccgactccctgatcggcctcaaggagaacgtc
atcatcggtaagctcatcccggccggtacgggcctgtcccgctaccgcaacatccgggtg
gagccgaccgaggaggccaaggcagcgatgtactcggccgtcggttacgacgacatcgac
tactcgccgttcggcacgggctccggtcaggccgttccgctggaggactacgactacggg
ccgtacaaccagtag
DBGET
integrated database retrieval system
