Streptomyces huasconensis: J2N69_24890
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Entry
J2N69_24890 CDS
T07920
Name
(GenBank) RNA polymerase sigma factor SigF
KO
K03090
RNA polymerase sigma-B factor
Organism
shk
Streptomyces huasconensis
Brite
KEGG Orthology (KO) [BR:
shk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shk03021
]
J2N69_24890
Transcription machinery [BR:
shk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
J2N69_24890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
PF0610-like_N
HTH_23
DUF7343
MarR_2
NirdL-like_HTH
HTH_24
MarR
IF2_N
Sigma70_ECF
HTH_3
HTH_Crp_2
GerE
HTH_AraC
HTH_ParB
HTH_28
DUF5560
Motif
Other DBs
NCBI-ProteinID:
UFQ17970
LinkDB
All DBs
Position
complement(5422885..5423916)
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AA seq
343 aa
AA seq
DB search
MRDGDGPVRDEERGTQSLPADGREGVRRMATGIPEQQAKPHPEDPGQPGPPTVPDVSEQA
EPTAKDELRQLSGRGGGRRAGNMSEHEHSRHHPQDRSGARAMFIELRGLDSGSPEYAELR
NQLVRMHLPLVEHLARRFRNRGEPLDDLTQVATIGLIKSVDRFDPERGVEFSTYATPTVV
GEIKRHFRDKGWAVRVPRRLQELRLSLTTATAELSQLHGRSPTVHELAEKLAISEEEVLE
GLESANAYSTLSLDVPDTDDESPAVADTLGAEDEALEGVEYRESLKPLLEDLPPREKRIL
LLRFFGNMTQSQIAQEVGISQMHVSRLLARTLAQLREKLLVEE
NT seq
1032 nt
NT seq
+upstream
nt +downstream
nt
gtgagggacggggacgggccggtgcgtgacgaagagcgcggcacacagagtctgcccgcc
gacggcagggagggggtgcgccgtatggccaccgggattcccgaacagcaggccaaaccg
cacccggaggacccgggccagccgggtccgccgacggtgcccgatgtgtcggagcaggca
gagccgaccgccaaggacgagctgaggcagctctccggccggggcggcgggcgacgggcg
ggaaacatgagcgagcacgagcacagccggcaccatccccaggaccgcagtggcgcacgc
gcgatgttcatcgagctgcgcggcctggacagcggcagtccggagtacgcggagctgcgc
aaccagctggtccgcatgcacctgccgctcgtcgagcacctggcccgccgcttccgcaac
cgcggcgagcccttggacgacctcacccaggtcgccacgatcgggctgatcaagtccgtg
gaccgcttcgacccggagcgcggcgtggagttctccacgtacgcgacccccacggtcgtg
ggtgagatcaagcggcacttccgcgacaagggatgggcggtccgcgtcccgcggcgtctg
caggagctgcgcctgtcgctgacgacggccacggcggagctgtcccagctgcacggccgc
tcccccacggtgcacgagctcgccgagaaactggccatctccgaagaggaggtcctggag
ggcctggagtcggccaacgcctactccacgctctccctggacgtccccgacacggacgac
gagtccccggccgtcgccgacaccctgggcgccgaggacgaggccctggaaggtgtcgag
taccgcgaatccctcaagccactcctggaagatttgccgccgcgcgagaagcgcattctg
ctcctgcgcttcttcggcaacatgacgcagtcgcagatcgcacaggaggtcggcatctcg
cagatgcacgtctcgcgcctgctcgcccgcacgctggcccagctgcgggagaagctcctg
gtggaggagtag
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