Shewanella halifaxensis: Shal_0002
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Entry
Shal_0002 CDS
T00654
Name
(GenBank) DNA polymerase III, beta subunit
KO
K02338
DNA polymerase III subunit beta [EC:
2.7.7.7
]
Organism
shl
Shewanella halifaxensis
Pathway
shl03030
DNA replication
shl03430
Mismatch repair
shl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Shal_0002
03430 Mismatch repair
Shal_0002
03440 Homologous recombination
Shal_0002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shl03032
]
Shal_0002
03400 DNA repair and recombination proteins [BR:
shl03400
]
Shal_0002
Enzymes [BR:
shl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Shal_0002
DNA replication proteins [BR:
shl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Shal_0002
DNA repair and recombination proteins [BR:
shl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Shal_0002
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_beta
DNA_pol3_beta_2
DNA_pol3_beta_3
PglD_N
Motif
Other DBs
NCBI-ProteinID:
ABZ74578
UniProt:
B0TLA5
LinkDB
All DBs
Position
1486..2586
Genome browser
AA seq
366 aa
AA seq
DB search
MKFSIDRDALLKPLQLVSGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGEVQLE
GEVVEGRTTVPAKKFLDIVKSLPDQVELKIEQQENRLLLRSGRSRFTLATLPAEEYPNVD
AFEAEIEFTLKQGTMKSLIDATQFSMANQDVRYYLNGLLLETEGNVLRAIATDGHRLALS
HRMIEASLPEKQVIVPRKGVLELMRSFEADDLDVTIAIGDNAIRATTATAVFTSKLVDGR
FPDYRRVLPKGGDKIVIASRLQLKQALLRASILSNEKFRGVRVQLENNLIKITANNPEQE
EAEEILDVEYENTPLEIGFNVSYLLDVLNNLPSDDVRITLIDGNSSALIDNHIEQDSMYV
VMPMRL
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atgaaattttcaattgatagggacgccttattaaaaccgcttcaactagttagtggcgcg
gttgaaagacgtcataacttgcccatcttggccaatttactcgttgaagtaagtggtcac
tcacttaagatgactggtaccgatttagaagttgagttagtcggtgaggttcagctcgaa
ggtgaggttgttgaaggtcgtactacggtcccagcgaagaagtttttggatatcgttaag
tctctacctgatcaggttgagcttaagatagagcagcaagaaaatcgtttactgttacgt
tcaggccgcagtcgctttaccttggctacattgccagctgaggagtatccaaatgtcgat
gcctttgaggctgagattgagtttactctgaagcagggtacgatgaagtcgttgatcgac
gcgacgcaattctctatggctaaccaagacgtacgttattacctcaatggtttactgctt
gagaccgaaggtaacgtattgcgtgccattgccaccgatgggcatcgcttggcgctaagc
caccgtatgatcgaagcctctctaccagagaagcaggtgattgtaccgcgtaaaggcgta
ttagagctgatgcgctcgtttgaagctgacgatttagacgtcactattgcgattggcgat
aatgctattagagcgacaacggcgacggcggtatttaccagtaagttggttgatggtcgc
ttcccagattatcgtcgtgtattaccaaaaggtggcgacaaaattgttatagcaagccgt
ctgcagctaaaacaggcattattgcgtgcttctatcctgtcgaatgagaagttccgtggt
gtgcgggtacagctggaaaacaaccttattaagatcaccgctaataaccctgaacaggaa
gaggctgaagagatcttagatgttgaatatgagaatacaccgctagagattggttttaac
gtcagttatctgcttgatgtattaaataacctgccttcagacgatgtacgtattactttg
atagatggcaactcaagtgcgcttatcgataatcacatagagcaagattctatgtatgtt
gtaatgccaatgaggttgtag
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