Shewanella halifaxensis: Shal_0290
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Entry
Shal_0290 CDS
T00654
Name
(GenBank) RNA polymerase, sigma 32 subunit, RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
shl
Shewanella halifaxensis
Brite
KEGG Orthology (KO) [BR:
shl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shl03021
]
Shal_0290
Transcription machinery [BR:
shl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Shal_0290
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
UCR_14kD
2Fe-2S_thioredx
Motif
Other DBs
NCBI-ProteinID:
ABZ74866
UniProt:
B0TNW3
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Position
346897..347754
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AA seq
285 aa
AA seq
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MTVQTQTMALMVPQSSGSLESYVHSAHNIPMLEADTEYELAKRLQETGDLQAAKQLIMSH
LRFVVHVAKGYSGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVHWIKAEIHEYV
LKNWRIVKVATTKAQRKLFFNLRKAKKRLGWFSDSEVGMVADSLGVSKADVTEMESRMAA
QDPAFDLASDNDDEHDYAPMHYLEDHSSDLASQVESDNWEQNNQARLLSAIKTLDERSQH
ILKARWLDEDKTTLQDLASTYQVSAERIRQLEKNAMSKLKGCMEV
NT seq
858 nt
NT seq
+upstream
nt +downstream
nt
atgacagttcaaacgcaaacaatggcactgatggttcctcagagtagtggaagcctcgag
tcttatgttcattcagcacacaacattccgatgttggaagccgatacagaatatgagcta
gcgaagcgtctacaggagaccggtgacctacaggctgcgaaacagttgattatgtcgcac
ctgcgtttcgtagtgcatgttgcaaagggttattctggttatggtttaccgcaagctgac
ttaattcaagaaggtaatatcggcctgatgaaagcggttaagcgtttcgaccctgatgtg
ggcgtgcgcttggtatcgtttgccgtgcattggattaaagctgaaattcatgagtatgtg
cttaaaaactggcgcatcgtaaaagttgccaccaccaaagcgcagcgcaagttattcttc
aatcttcgtaaagctaaaaagcgcttaggttggtttagcgatagtgaagtgggaatggtg
gccgacagtttaggggtgtcgaaagccgatgtgaccgagatggaatcacgtatggcagcg
caagatccagcatttgatcttgctagcgacaatgatgacgagcatgattatgcacctatg
cattatcttgaagatcattcatcagacttagcttctcaagttgaaagtgacaactgggaa
cagaataatcaagcgcgtttgctatcggccatcaagactcttgatgagcgtagccaacat
atccttaaggcgcgctggttagatgaagataagaccacattgcaagatttagcatcgacc
tatcaagtgtctgctgaacgtattcgacagttggaaaagaatgcgatgagtaagctgaaa
gggtgtatggaggtttaa
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