Shewanella halifaxensis: Shal_0436
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Entry
Shal_0436 CDS
T00654
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
shl
Shewanella halifaxensis
Pathway
shl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shal_0436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shl03019
]
Shal_0436
03400 DNA repair and recombination proteins [BR:
shl03400
]
Shal_0436
Enzymes [BR:
shl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Shal_0436
Messenger RNA biogenesis [BR:
shl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Shal_0436
DNA repair and recombination proteins [BR:
shl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Shal_0436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
zf-CXXC
HEM4
Motif
Other DBs
NCBI-ProteinID:
ABZ75011
UniProt:
B0TQL8
LinkDB
All DBs
Position
509886..511709
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AA seq
607 aa
AA seq
DB search
MDQAALDNSVDQLSSTLQSVFGYRTFREGQREVIEQICAGQDCLVIMPTGGGKSLCYQLP
ALIMPGLTVVVSPLISLMKDQVDSLIQTGVSAAYLNSSLPREESLQVLQKMRYGELKLLY
VSPERLLQASFIDRLHELNVSLFAIDEAHCISQWGHDFRPEYAALGRLRQQFPQVPIMAL
TATADKATRADICERLTITPHSLLTSFDRPNIRYTVAEKLNAANQLRQFVDAQNGTSGIV
YCSSRRRVDEVAERLRLQGHQAEAYHAGKTQEERADVQDRFLKDQLDIVVATVAFGMGIN
KSNVRYVVHYDIPKSVEAYYQETGRAGRDGLDSEALMLFDPADIGRVRHLIEQSEPGPQQ
QVEFHKLNTMAAFAEAQTCRRQVLLHYFDEPALKACGNCDICLDPPKKYNGIQDAQKVLS
CIYRIGQRFGINHLIEVLRGSKSASVIERGHDKLSTWGIGKEKSHEHWLSVIRQLIHLGL
ANQDITRGSSVTLNPSARAVLKGEVELLLAEPRIVIQTTKRRSNNSRAPLNYDRKLFARL
KLLRRTLAEELDVPPYLVFNDATLAEMAAILPTSPGEMLAVNGVGERKLERFGGEFLDEI
ADYLAEG
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggatcaggccgcgctcgataattcagtcgatcagttatcttccacccttcagtcggta
tttggttatcgtacttttagagaggggcagcgagaggtaattgaacagatctgcgcggga
caagattgcctagtgatcatgccaacgggtggcggtaaaagcctgtgttatcaattgcca
gcattaatcatgcccggtttgactgtggtggtatctccgctgatctcattaatgaaagat
caggtcgacagccttatccaaaccggcgtctcagcggcctacttaaactcatctctgcca
agagaggagagtctacaagtcttacaaaagatgcgctatggcgagctaaagttgctgtat
gtatcgccggagcgtctactacaagcaagttttatcgataggctacatgagcttaatgtc
tctttgtttgcgattgacgaggcgcactgtatctcgcagtggggtcatgactttaggccc
gaatatgccgcattaggccgcttacgccagcaatttccccaagtccctatcatggcactg
acggcgacggccgataaagcgacccgagccgacatttgtgagcgtttaaccattacgccg
cactctttactgaccagttttgatcgacccaatattcgctataccgtagctgaaaagctc
aatgcagcgaatcagttgcgtcagtttgtcgatgcgcaaaacgggactagtggcattgtg
tactgtagcagtcgacgtcgagtcgatgaggtcgcagagcgcttgcgtctgcaggggcat
caagccgaagcttaccatgcgggtaaaactcaagaagagcgagctgatgttcaagaccga
tttttaaaagaccagctcgatattgtggtggcaaccgtggcatttggtatggggatcaac
aagtcaaacgtgcgctacgtggtgcattacgatatccctaagagcgtagaggcttactac
caagaaactggtcgtgctgggcgagatggcttagattctgaagctctgatgctatttgac
cctgccgatatcggtcgagtgcggcacttaatcgagcagtcagagcctgggccgcagcaa
caagttgagtttcacaagctcaatactatggctgcttttgccgaggcgcagacttgccgt
cgccaagtgttattacattatttcgatgaacctgcgctaaaggcgtgtggtaactgcgat
atttgcctcgacccgcctaaaaaatacaacggtattcaagatgcacaaaaagtgctgtct
tgcatctaccggattgggcaacgttttggcattaaccaccttatcgaagtgctacgtggg
tcaaagtcggcgagcgtgattgagcgtgggcatgacaagttatctacctggggcattggt
aaagagaagagccacgagcattggctcagcgtgataagacagttgatccatctagggctt
gccaatcaggacattacccgaggttcttcggtgacgcttaacccatctgcacgtgcagta
ctaaaaggtgaagttgagttactgcttgctgagccaagaatcgtcattcaaaccactaag
cgccgcagtaataattcacgtgcgccgcttaattacgatcgtaagttgttcgcaagactt
aagttgttgcgtcgcacgctggcagaggagttagatgtgccgccatacttagtgtttaat
gatgcaactttggctgaaatggctgcaatactaccaaccagtcctggcgagatgttggct
gtaaacggcgtaggtgaacgcaagttagaacgctttggtggtgagtttcttgatgaaata
gcggactacctcgcagaaggttaa
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