Shewanella halifaxensis: Shal_0543
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Entry
Shal_0543 CDS
T00654
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
shl
Shewanella halifaxensis
Pathway
shl03420
Nucleotide excision repair
shl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Shal_0543
03430 Mismatch repair
Shal_0543
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shl03400
]
Shal_0543
Enzymes [BR:
shl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Shal_0543
DNA repair and recombination proteins [BR:
shl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Shal_0543
MMR (mismatch excision repair)
Other MMR factors
Shal_0543
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_30
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABZ75118
UniProt:
B0TRE6
LinkDB
All DBs
Position
652884..655049
Genome browser
AA seq
721 aa
AA seq
DB search
MDVSSLLDGLNDKQREAVGAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYAILAV
TFTNKAAKEMRERVEKVAGGNMSRMWIGTFHGLAHRLLRTHYKDANLPESFQILDSDDQL
RLIKRILKSLNLDEKQYPPRQAQGYINGKKDLGLRPSHIDAGGFPIEQNLLKIYQIYQDS
CDRAGLVDFAEILLRAHELWLNKPHILDHYQDRFKHILVDEFQDTNAIQYAWIRVLAGST
ANVMIVGDDDQSIYGWRGAQVENLHKFLADFPAAQTIRLEQNYRSSGNILNASNQLIANN
PDRMGKKLWTDDKDGEPIGLYCAFNEMDEARFIVGRITDWQDEGGKLEDCAILYRSNAQS
RVLEEALLHKGIAYRIYGGLRFFERQEIKDAMGYLRLINNKNDDAAFERVVNTPTRGIGD
RTLEIIRTTARQQEMTLWEASLRLIEEKVLNGRAANAVRGFMDLIIAMRMDSDELSLQRT
TDHVIQTSGLKAMYEAEKSEKARARVENLEELVTAARSFVMPEEIEDMGELNAFLSHAAL
EAGEGQADEFTDAVQLMTLHSAKGLEFPMVFMAGVEEGLFPSQMAIDEGDRLDEERRLCY
VGMTRAMQKLYITYAESRRIYGRESFARPSRFVKEIPEQYVQEIRMRTQVSAPAVSSRFS
KQDDSFNDSGFKIGQRVMHPKFGEGTVTNYEGSGAQARIQVNFFDVGSKWLVIAYARLEA
L
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcttctttactcgacggcctaaacgacaagcagcgtgaagctgttggtgca
ccgcaatctagcatgctagttttggcgggagctggtagtggcaaaacgcgggtgttaacc
cacagaattgcctggttgatgcaggttgaacagcaaagcccttatgccattttagcggta
acctttaccaataaagcggcaaaagagatgcgtgagcgtgttgaaaaggtcgctggtggc
aacatgagccgcatgtggatcggtaccttccacggcttagcacatcgtttactacgcacc
cattataaagatgctaatctgcctgagagctttcaaatcttagactcagacgatcaactg
cgtctgatcaaacgaattctaaaaagccttaacttggacgagaaacagtatccgccaaga
caagcgcaaggctatatcaacggcaagaaagacttaggtctacgcccatcgcatatcgat
gcgggcggtttcccgattgagcaaaatttactgaagatctaccagatctatcaagactct
tgcgatcgtgccggcttagtggattttgcagagatcttactcagagcccatgagctatgg
cttaacaaaccacatattttggatcactaccaagatagatttaagcatatattagtcgac
gagtttcaagatactaacgccatccaatatgcgtggatccgtgtgcttgccgggtcaacg
gctaacgtgatgattgtgggtgatgacgatcagtctatctacggctggcgtggcgctcag
gtggagaacctgcataagtttttagccgacttccctgcggcgcaaaccattcgtttagag
cagaactatcgctcgagcggtaatattcttaacgcatcgaaccagctgattgccaataat
ccagatcgtatgggcaagaagctgtggaccgatgataaagacggtgagccgattgggctt
tattgcgccttcaatgagatggatgaagcgcgctttatcgtgggtaggatcactgactgg
caggatgaaggcggtaagttagaggattgcgccattctttatcgctctaacgctcagtct
cgagtgctggaagaagccttattacataagggcatcgcctatcgtatctatggtggccta
cgcttcttcgaacgccaagagattaaagatgccatgggctacctgcggctaatcaacaac
aagaatgatgatgccgcctttgagcgtgtggtgaataccccaacccgtggtattggcgat
cgcaccttagagattattcgtaccacggcgcgtcagcaagagatgacgctgtgggaagcg
agtcttcgcttaatcgaggagaaggtcctcaatggtcgcgccgctaatgcggttcgtggc
tttatggacttgattatcgccatgagaatggactccgatgagctatcgctgcagcgcacg
actgaccatgttattcaaacatcgggtcttaaggcgatgtatgaggcagaaaagagcgag
aaagcgcgtgcacgtgtcgaaaacttagaggaactcgtcactgctgcccgtagctttgtg
atgccagaagaaattgaagatatgggcgagcttaacgccttcctatcccatgccgcgtta
gaggcgggtgaagggcaggccgatgagtttaccgatgccgtacaattgatgacattgcac
tcggctaaaggtcttgagttcccaatggtatttatggctggtgtggaggaaggtttgttc
ccgagccagatggcaattgatgaaggggatcgtctcgatgaagagcgtcgtctttgttat
gtgggtatgacccgcgccatgcagaagctgtatatcacctatgccgagtcgagacgtatc
tatggccgtgagagctttgctagaccttcgcgcttcgttaaagagatccctgagcaatat
gtgcaagagatccgtatgcgaactcaggtttcagcgccggccgttagcagtcgctttagt
aaacaagatgatagctttaatgactccggctttaagattggccaacgtgtgatgcacccc
aaattcggtgagggcacggtaacaaattatgagggaagtggagctcaggcgcgcatccag
gttaactttttcgatgttggcagcaagtggttagtaatcgcttacgctcgcttggaggcg
ctttaa
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