Shewanella halifaxensis: Shal_1004
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Entry
Shal_1004 CDS
T00654
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
shl
Shewanella halifaxensis
Pathway
shl02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
shl00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Shal_1004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shl03021
]
Shal_1004
Transcription machinery [BR:
shl03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Shal_1004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DUF3391
PBP1_TM
YL1
Motif
Other DBs
NCBI-ProteinID:
ABZ75578
UniProt:
B0TIN3
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Position
complement(1234698..1236545)
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AA seq
615 aa
AA seq
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MISMDHTPQSQLKLLLAKGKEQGYLTYAEVNDHLPADMVDSDQIEDIIQMINDMGIRVYE
QAPDADEIMMSEDSTDDDAAEEAAAALATVEAELGRTTDPVRMYMREMGTVELLTREGEI
VIAKRIEEGINTVQASVAEYPQAIAMILEQFDRYEAEEVRLSDIISGFVDPNAEDVAPTA
THVGSDLSDDDLDDEDDDDDDDDDDEEEEGPKGPDPEEAKEKFTTLRVAHENALRIIADK
GRGHPESTVALFEIGEIFKEFRLMPKQFDRLVKNMRSMMDKVRVQERLIMKLCVEQAKMP
KKNFVKVYTSNESSIEWFNEELASGKPYAEGLKVVSFDVQRCRAKLDAIETETGLAIGAI
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
SPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATGE
SLKNATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPSRSEILKSFLDE
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgatatctatggatcatactccgcagtcgcaacttaaattgttgctcgccaaaggtaaa
gagcaaggttacttaacctatgcagaagtgaacgatcacttacctgcagacatggtcgat
tctgaccagattgaagatattatccagatgatcaatgacatgggtattcgagtctatgaa
caggctccggatgctgatgaaatcatgatgtctgaagacagcaccgatgatgatgctgca
gaagaagctgctgctgcacttgcaacagtagaagctgaattaggtcgtaccaccgatcca
gtacgtatgtatatgcgtgaaatgggtaccgttgaacttctaacacgtgaaggcgagatt
gttatcgctaagcgtatcgaagaagggatcaacacggttcaagcatctgttgcggaatat
ccgcaagcgattgcgatgatcctagagcagttcgaccgttacgaagctgaagaagttaga
ctatctgacattatctcaggtttcgtcgatccaaatgcagaagatgtcgctccaacggca
actcacgttggttcagatttatctgatgatgatttggatgacgaagatgatgacgatgat
gacgatgatgatgacgaagaagaggaaggtccaaaggggccggatcctgaagaagctaaa
gagaaattcactacgcttcgcgtcgctcatgaaaatgcattaagaatcattgcagacaaa
ggccgtggtcacccagagtcgactgtagcgctatttgaaattggcgagatcttcaaagag
ttccgtttgatgcctaagcagtttgaccgcttagttaaaaacatgcgctctatgatggac
aaagtccgtgttcaagaacgtttgatcatgaagctttgtgttgaacaagccaaaatgccg
aagaaaaacttcgtcaaagtttatactagcaacgaaagcagcatcgaatggttcaacgaa
gaacttgcttcaggcaagccatacgctgaaggattaaaggttgtttcgttcgatgtacag
cgttgtcgtgcaaagcttgatgcgatcgagactgaaactggtctagctattggcgcaatc
aaagatatcaaccgtcgtatgtccatcggtgaagcgaaagctcgtcgtgcaaagaaagag
atggttgaagcgaacttacgtctagtaatttctatcgcgaaaaagtataccaaccgtggt
ctacagttcttggatcttatccaggaaggtaacatcggtctgatgaaagcggtagataag
tttgaataccgtcgtggttataagttctcgacttatgcaacttggtggatccgtcaggcg
atcactcgctctattgctgaccaagcaagaacgatccgtattccagtacatatgatagag
actatcaacaagcttaaccgtatctctcgccaaatgttgcaagagatgggtcgtgaacct
tctccagaagagttggctgagcgcatgttaatgcctgaagataagatccgtaaggtactt
aagatcgctaaagagcctatctcaatggaaacccctattggtgacgatgaagattcgcac
ttaggtgactttattgaagatacgacgcttgagctacctctggactctgcgacaggcgaa
agcttgaagaacgcaactcacgaagtactagccggtctaacggctcgagaagcgaaagtt
ctgcgtatgcgtttcggtatcgatatgaatactgaccacacgctagaagaggttggtaag
cagtttgacgtaacacgtgaacgtattcgtcagattgaagctaaagcgctacgtaagttg
cgccacccttctcgctcagagatcttgaagtctttcctagacgaatag
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