Shewanella halifaxensis: Shal_1118
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Entry
Shal_1118 CDS
T00654
Name
(GenBank) apurinic endonuclease Apn1
KO
K01151
deoxyribonuclease IV [EC:
3.1.21.2
]
Organism
shl
Shewanella halifaxensis
Pathway
shl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
shl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Shal_1118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shl03400
]
Shal_1118
Enzymes [BR:
shl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.21 Endodeoxyribonucleases producing 5'-phosphomonoesters
3.1.21.2 deoxyribonuclease IV
Shal_1118
DNA repair and recombination proteins [BR:
shl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
Shal_1118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-ProteinID:
ABZ75687
UniProt:
B0TJ96
LinkDB
All DBs
Position
complement(1357977..1358831)
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AA seq
284 aa
AA seq
DB search
MQASHLIGAHVSAAGGIANAPLNAAAIGANAFALFTKNQRRWQANDLEEKQILLFKQHCH
DANISLESILPHDSYLINLGHPDDELLEKSRQAFYDEMQRCEQIGLSLLNFHPGSHLRKI
PIDDCLAKISESINLALERSSGVTAVIENTAGQGSNLGHSFEQLAQIINGVEDKSRVGVC
IDTCHLFAAGYDIRTQEACKQTFDLFDKVVGNQYLKAMHLNDSKTALNSRVDRHESLGQG
EIGQQAFASLMKLDVIKGIPLILETIRPEIWQEEINWLRFLAKQ
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcttcacaccttattggcgcccatgttagcgccgctggcggtatcgccaatgct
ccactaaatgccgcagcgattggcgcgaatgcttttgctctgtttaccaaaaaccaacgt
cgctggcaggcgaatgacctcgaagagaagcaaatattactattcaagcagcattgtcac
gacgctaatatcagcctcgaatccattttgcctcacgatagttacttgattaatttgggt
cacccagatgatgagctgttagaaaaatctcgtcaggccttctatgacgaaatgcaacgc
tgcgaacagataggccttagtttattgaactttcaccctggtagtcacctaagaaaaata
cctatcgatgactgcttagcaaaaattagtgaatcgataaacttagccttagaacgttca
tctggcgtgaccgctgtaatcgaaaataccgcaggccaaggttccaatcttgggcactca
ttcgaacagttagcgcagatcatcaatggtgtggaagataagtctagggttggcgtctgt
atcgatacttgtcacctgtttgcagcaggttatgatattcgcacccaagaggcttgcaag
caaacctttgatcttttcgataaggtcgtgggtaatcaatacctgaaagccatgcatttg
aatgacagtaaaacagcgcttaatagtagagtcgaccgccatgaatccttagggcaaggt
gaaataggtcagcaagcgtttgctagcttgatgaagctagatgtgattaaagggatccca
cttattttagaaacgatacgcccagagatctggcaggaagagattaactggttacgtttt
ctcgctaagcagtga
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