Shewanella halifaxensis: Shal_1218
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Entry
Shal_1218 CDS
T00654
Name
(GenBank) RNA methyltransferase, TrmA family
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
shl
Shewanella halifaxensis
Brite
KEGG Orthology (KO) [BR:
shl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
shl03009
]
Shal_1218
Enzymes [BR:
shl01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
Shal_1218
Ribosome biogenesis [BR:
shl03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Shal_1218
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Methyltransf_11
MTS
PCMT
Methyltrans_SAM
Methyltransf_23
TRM5-TYW2_MTfase
Methyltransf_15
Cons_hypoth95
Methyltransf_12
UPF0020
RrnaAD
N6_N4_Mtase
Methyltr_RsmB-F
TehB
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
ABZ75787
UniProt:
B0TK00
LinkDB
All DBs
Position
1480217..1481554
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AA seq
445 aa
AA seq
DB search
MAQFFKAKPNTSKQLSSKLSLKVTQLDHLGAGIAHHDGKIVFINGALPGETVSVQLTEQK
KKFARAKLLKIDKASAQRVSPLCPHFDKCGGCDLQHLDIDAQRKHKASTLVDLVNKFAQT
QAGEVCDTLSDNAWHYRRRARLATWFDKNTKHISLGFRASSSSDVVEIQSCAVLAEPLSA
LIPDLAFMLNQLSGKKALGHVELTQADNGNFVVLRVTKALSDKDKARLVEFANKHQVIVL
LQDDDAQCEHLNGAGEQPYYGFDDNQVKLNFSPGNFIQVNAQVNQAMVSQAVEWLSPKAD
ERVLDLFCGIGNFSLPLAKDGAEVIGVEGVQAMVEQARINAKQSGLDKVSFYHADLSADL
SKEPWLGKVDKMLIDPARAGAYESMQSLKKLKPKALVYVSCNPASLARDSEVILKQGYQL
KKIGLVDMFPQTHHLESMALFELKN
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atggcacaattttttaaagcaaaaccaaatacatctaaacaattatcatcaaaattgtca
ttaaaggtgactcagctagatcacctcggtgctggtatcgctcaccacgatggcaagatc
gtatttatcaatggtgcgttgccaggtgagacggtatcggtgcaattgactgagcaaaag
aaaaagtttgctcgagctaagttacttaaaattgataaagcctccgcgcagcgggtttca
cctctttgcccacatttcgacaaatgtggtggctgtgatctgcagcaccttgatatcgat
gcacagcgtaagcataaggccagtaccttagtcgatttggtgaataagtttgctcaaacc
caggctggtgaagtatgtgacaccctaagtgataacgcttggcattatcgccgccgagcc
cgtttagcgacctggtttgataaaaataccaagcacataagccttggatttagagccagt
agcagcagtgacgtggttgagatccaatcttgcgctgtgttagccgagccgttgtcggcg
ttaattccagacttggcatttatgcttaaccagttaagcggtaagaaagccctaggccac
gttgagctgactcaagccgataacggtaactttgtggtgctgcgtgtgactaaggcgtta
tcggataaagataaggctaggttagttgaatttgcgaataagcatcaggtcatagtgctg
ttgcaagatgatgatgctcagtgcgagcacctaaatggagcgggtgagcagccttattat
ggttttgatgataaccaagtcaaacttaacttctcgccaggtaactttatccaagttaac
gctcaggttaaccaagccatggtcagtcaggcggttgagtggctatcaccaaaggcggac
gaacgggtattagatctgttctgcggtattggcaactttagtttgccattggcgaaagat
ggcgccgaggtgattggggttgaaggtgtgcaggctatggttgagcaggcaagaattaat
gctaagcagagcggcttagataaagtctctttctatcatgccgatctgagcgccgatctg
tcgaaggaaccctggcttggtaaagttgataagatgcttatcgatccggctcgcgcgggg
gcatacgaaagcatgcaatctctgaagaaactaaagccgaaagccttagtctatgtttct
tgtaatccagcgagccttgcccgtgatagcgaggtgattttaaagcaaggttatcagctt
aaaaagatcggattagtggatatgtttccacaaacccatcacttggagtcaatggcactg
tttgagttaaaaaattaa
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