Shewanella halifaxensis: Shal_1540
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Entry
Shal_1540 CDS
T00654
Name
(GenBank) ABC transporter related
KO
K18893
ATP-binding cassette, subfamily B, multidrug efflux pump
Organism
shl
Shewanella halifaxensis
Pathway
shl02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
shl00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
Shal_1540
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
shl02000
]
Shal_1540
Transporters [BR:
shl02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
Shal_1540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC_membrane
SMC_N
RsgA_GTPase
MMR_HSR1
AAA_22
AAA_29
AAA_21
Septin
AAA_16
AAA_15
Motif
Other DBs
NCBI-ProteinID:
ABZ76106
UniProt:
B0TNC0
LinkDB
All DBs
Position
complement(1860322..1862151)
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AA seq
609 aa
AA seq
DB search
MFKRFESWVDPFPSAEPQQPPKGIYAFCRHYTRGFEVPLVIMSILTALLAILEVSLFGFM
GDLVDLLINNDPDTLFEKEGMKLLGMTLLVIVVIPVLVLLHALIVYQALLSNYPMSIRWL
AHRYLLKQSVSFYQSDFAGRVATKVMQTSLAVRETVTKLLDVLVYILVYFTSMVVMIAKV
DLRLVLPMLVWLAVYIALQFRFLPKLKKVSTEQADARSTMTGRIVDSYTNIATVKLFSHT
QEEAQYAKGSMKTFLHTVYRQMRLVTWINVSVQIINYLLAFAIAAVSIWLWSDNAITVGA
IAIAISLALRLNGMSQWIMWEISSLFENIGTVADGMNTLSKPTDINDITNAPELIVRKGA
IDFNNVSFHYGEDCGVIDELNLNIKAGEKVGLVGRSGAGKSTLVNLLMRFHDVESGSITI
DKQDITQVKQDSLRTHIGMVTQDTSLLHRSIRDNILYGNPDASDEELVQAIKNSQAYEFI
QTLSDPEGNQGLDAQVGERGVKLSGGQRQRIAIARVLLKNAPILLLDEATSALDSEVEAA
IQESLYQLMQGKTVIAIAHRLSTIAAMDRLIVLDEGKIVEQGTHQELIRSGGIYAQLWAH
QTGGFLGVD
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgttcaaacgatttgagtcttgggttgaccccttccctagcgcagaaccacaacagccc
cctaaagggatctatgcattttgccgccattacacccgcggctttgaagttccactggtt
atcatgtcgattctaacggcgctgctagccattcttgaagtgtctttatttggttttatg
ggggatttagttgatctattaattaataacgatcccgatactctttttgaaaaagaaggc
atgaaattacttggaatgacactattggtcatagtcgtcatcccggttttggtgttgctg
catgcccttattgtctatcaggcgctattgagtaattaccccatgtcgatccgctggcta
gcccataggtatctgctaaaacaaagtgtctcattttaccaaagcgatttcgcaggccgt
gttgcaaccaaggtgatgcaaacctcattagccgttagagaaaccgtcactaagctatta
gatgtgttggtttatattctggtttatttcacctctatggtggtaatgatagcgaaggtg
gatcttagattggtgctgcctatgcttgtctggcttgctgtttatatcgctttgcaattt
aggttcttacccaagctaaaaaaagtgtcaactgaacaagccgatgctcgctcaacaatg
acgggacgaattgtcgatagttacactaacatcgccacggtaaagcttttctcacacacc
caagaagaagcccaatacgccaaaggcagcatgaaaacttttttgcataccgtatataga
cagatgcgtttagtcacttggattaatgtgagtgtgcagatcatcaactacctattagcc
tttgctattgctgctgtatctatttggctttggagtgataatgcgattacggttggtgcg
attgcgattgccatcagtttggcgttaaggctcaacggtatgtcgcaatggatcatgtgg
gaaattagctcgctatttgagaacattggtacggttgcagatggtatgaatacgctgtca
aagcctaccgatatcaatgacatcactaatgcgcctgagctaattgtccgtaaaggagcc
atcgactttaataatgtcagttttcactacggtgaggactgcggtgtgattgatgagtta
aatctgaatatcaaagctggcgaaaaagtcggtttagtgggtcgttctggcgcaggtaag
tcaactttagttaatttgcttatgcgttttcatgacgtggagtcaggtagtattacgatt
gataaacaagatattactcaagtcaaacaggactcacttcggacccatataggcatggtg
acccaagatacctcgttactgcaccgctctattcgcgacaatattctttacggtaatcct
gatgcgagtgatgaagagcttgtacaagcaataaaaaactctcaagcgtatgagtttatt
caaaccttgagcgatcctgagggtaatcaaggcttagatgcacaggtcggcgaacgcgga
gttaaactttcaggcggccaacgtcaacgtattgctatcgcgcgagttctacttaaaaac
gccccgatccttctcttagacgaagccacatccgcattagactccgaagtcgaagctgca
atacaagagagtctttatcaactaatgcagggaaaaaccgtcattgcgatcgcgcatcga
ctatcaaccattgctgcaatggatcgattaattgtactcgatgaagggaaaatcgtagag
caagggacgcatcaggagttgattcgctcaggtgggatctacgcacaactttgggcacac
caaacggggggatttctcggcgttgattaa
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