Shewanella halifaxensis: Shal_1767
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Entry
Shal_1767 CDS
T00654
Name
(GenBank) ribonuclease, Rne/Rng family
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
shl
Shewanella halifaxensis
Pathway
shl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shal_1767
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shl03019
]
Shal_1767
03009 Ribosome biogenesis [BR:
shl03009
]
Shal_1767
Enzymes [BR:
shl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Shal_1767
Messenger RNA biogenesis [BR:
shl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Shal_1767
Ribosome biogenesis [BR:
shl03009
]
Prokaryotic type
rRNA processing factors
Shal_1767
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Sarcoglycan_1
Motif
Other DBs
NCBI-ProteinID:
ABZ76332
UniProt:
B0TQT7
LinkDB
All DBs
Position
complement(2117079..2120378)
Genome browser
AA seq
1099 aa
AA seq
DB search
MTFIKKNYVIMKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGTITRVE
PSLEAAFVDYGAERHGFLPLKEIAREYFPKGYSFQGRPSIKEVIKEGQEVIVQIDKEERG
NKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDERTELKAALAELEVPQGMGLIVRT
AGVGKDPAELKWDLKVLQHHWAAIKEAAESAPAPFLIHQESNVIVRAIRDYLRRDVGEIL
IDHPRIYEQAKEHVSLVRPDFVERIKRYDAEVPLFTHYQIETQIESAFQREVRLPSGGSI
VIDPTEALTSIDINSARATKGSDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMT
PVRHQREVEKRMQDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQG
TIRGTESLALSILRLMEEEAIKENTSQIEAVVPVDVAAFLLNEKRKAIRITEKRHNVEVY
VIPDPNMTTPDYRVVRHRKDDEISESSYKLLEKEEAKLYEPRKLERAATPQPALKGFSTP
KQAPVVETKPAAPKIEEPGLFAKIAAAISSLFGSKEEPKTEPKKQDKDSRNQGRNNNRRN
NNRRNDPRRNRNDNRSDSRNDSRNDSEQSKDKRAKSSRSDSSDTRLPTEDTNKRQPRNEK
VRKDTKSEAPTTEQPKQEAARERRQRRNMRRKVRVNNEQQEELKAEVAATEAPVQAKPSN
DDKPARPKRQPRKPKAKAETVDVEAVEQIETAGSVESAVQAPEAPKTAVETKVETETTAI
ETAIEATEDAVATEDNAREPREGQRRSRRSPRHLRAAGQRRRRDEDAQQNEDGSSVAAFV
PNDVENSFEATQPPVVVVEATAIEPIQVEPKAEAPVVQAPAEVKVEAPVASVSVETPAEV
KVEAPVASVPVETPAEVKVEAPVVETPAEVKVEAPVVETPAEVKVEAPVVETPAEVKVEA
PVVETPAEVKVEAPVVETPAEVKVEAPVVETPAEVKVEAKLGASAPMAKPAAIMPSQQPV
VEIPVAEKAAVVETAVDVKPVAKATSRFGSMVMSETTKPTVESRENIATPTGRQYEATES
AEATKPRTANSANSETVRT
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgacctttataaagaagaattacgtcatcatgaaacggatgttaatcaatgcgactcaa
tctgaagagttgcgcgttgccctcgttgatgggcaacaactgtatgatttggatatcgaa
agcccaggtcatgaacaaaagaaagccaatatttacaaaggcactatcacacgagttgaa
ccgtctcttgaagcggctttcgttgattatggtgctgagcgtcacggcttcctaccactt
aaagaaattgctcgtgaatacttccctaaaggttattctttccaaggtcgtcctagtatt
aaggaagtgattaaggaaggtcaggaagttatcgttcaaattgataaagaagagcgtggc
aacaaaggcgctgcacttacaacctttatcagtcttgcgggttcttaccttgtattaatg
ccaaataaccctcgtgcaggcggtatttcacgtcgtatcgaaggtgatgagcgtacagag
cttaaagcggcgcttgcagagctagaagtaccacaaggcatgggtcttatcgtacgcacc
gcaggtgtaggtaaagatccagctgagctaaagtgggacttaaaagtgcttcagcaccac
tgggcagcgatcaaagaagctgcagaaagtgcaccagcacctttcctaatccatcaagaa
agtaacgttatcgttcgcgcgatccgtgactatttacgccgcgacgttggcgagatcttg
atcgatcacccacgcatttatgaacaggcaaaagagcacgtttcacttgttcgtcctgac
tttgtagagcgtattaagcgttacgacgctgaagtaccactgtttacgcattaccagatt
gaaactcaaatcgagtctgcgttccaacgcgaagtgcgtctaccatctggtggttcgatc
gttatcgatcctacagaagccctaacctctatcgatattaactctgctcgcgcaacgaaa
ggtagcgatatcgaagagacggcactcaatactaacctagaagctgctgatgagattgca
cgtcaattacgtctacgtgacttaggtggcttagttgttatcgatttcatcgatatgaca
ccagtacgtcatcaacgtgaagttgaaaagcgtatgcaagatgccgttcatcacgacaga
gcacgtgtacaattaggtcgaatttcacgttttggtttgatggaaatgtcgcgtcagcgt
ctacgtccttctcttgaagagtctgccgcacacctatgtcctcgttgccatggacaaggt
acgattcgtggtactgagtctctagcactatcaattcttcgtctaatggaagaagaagcg
attaaagagaacacatcacaaattgaagccgttgttcctgtcgatgttgcagctttctta
ttgaatgaaaagcgtaaagccattcgtatcacagaaaagcgccacaacgtagaagtgtat
gtcatcccagatccaaatatgacaacgccagattaccgtgttgtacgtcaccgtaaagat
gacgagatcagcgaatctagctacaagctacttgaaaaagaagaagctaagctatacgaa
ccacgtaagcttgaaagagctgccactcctcagccagcattaaaaggcttctctacgcca
aagcaagcgccagtagttgaaactaaacctgctgcaccaaagatagaagagccaggttta
ttcgcgaagatcgcagcggcaattagctcactatttggttctaaagaagaaccaaaaact
gagcctaagaagcaagataaagatagccgtaatcagggccggaacaataatcgccgtaat
aacaatcgtcgaaatgatcctcgccgcaaccgtaatgacaatcgcagcgatagccgtaac
gatagccgcaatgacagtgaacagtctaaagacaaacgggctaaaagcagtcgtagtgac
agcagcgacacccgcttaccgactgaagacactaataaacgtcagccacgtaacgaaaaa
gtgcgtaaagacactaagagtgaagcgccaactaccgagcagcctaagcaagaagctgcg
cgtgaacgtcgtcagcgtcgtaacatgcgtcgtaaggtacgtgtaaacaatgaacagcaa
gaagagctaaaagctgaagttgcagcgactgaagcgccagtgcaagcaaagccatcaaat
gatgacaagccagcacgtcctaagcgtcagccacgcaagcctaaagcaaaagcagagact
gttgatgttgaagcggtagagcagatcgaaacagctggcagtgtagaaagtgctgtacaa
gcacctgaagctcctaaaacagctgtagaaacaaaagttgaaacagaaacaacggcaata
gaaaccgctattgaagcgactgaagatgccgttgcgactgaagacaatgctcgtgagcct
cgtgaaggtcaacgtagaagtcgtcgtagcccacgccacttgcgtgcagcgggacaacgt
cgacgtcgtgatgaagatgctcagcagaatgaagatggttcatctgtcgcagctttcgtt
cctaacgatgttgaaaacagttttgaagcgactcagccccctgttgttgtcgttgaagcg
acagcgatagagccaatacaggttgaaccaaaggctgaagcgcctgttgttcaagctcca
gctgaagttaaagttgaagcgccagtggcttcagtatcagttgagactccggctgaagtt
aaggttgaagcgccagtggcttctgtaccagttgagactccggctgaagttaaagttgaa
gctccagtagtcgaaactccggctgaagttaaagttgaagcacctgttgttgagactccg
gctgaagttaaggttgaagctccagtagttgaaactccggctgaagttaaggttgaagct
ccagtagttgaaactccggctgaagttaaagttgaagcaccagtagttgaaactccagct
gaagttaaagttgaagcacctgttgttgagactccggctgaagttaaagttgaagcgaaa
ctgggcgcatctgctcctatggctaagccagcagcaattatgcctagccagcaaccagtg
gtagaaatccctgttgctgaaaaagcagctgttgtagaaacggctgttgacgttaagcct
gtcgccaaagcaactagccgctttggttctatggtaatgtcagaaacaacgaagcccact
gttgaaagcagagaaaatattgctacccctacgggacgtcaatatgaagcaactgaatct
gccgaagcaacgaagccaagaacggcaaacagtgctaattcagaaactgttcgcacataa
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