Shewanella halifaxensis: Shal_1856
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Entry
Shal_1856 CDS
T00654
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
shl
Shewanella halifaxensis
Pathway
shl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Shal_1856
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shl03400
]
Shal_1856
Enzymes [BR:
shl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Shal_1856
DNA repair and recombination proteins [BR:
shl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Shal_1856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
DUF3799
Motif
Other DBs
NCBI-ProteinID:
ABZ76421
UniProt:
B0TRK3
LinkDB
All DBs
Position
complement(2221225..2224947)
Genome browser
AA seq
1240 aa
AA seq
DB search
MSDNPVEDMISTAEQPLTATIVTEPLDTLTLPFGGSRLIEASAGTGKTFTIAGLYVRLLL
GHGIESPLTCEQILVVTFTNAATGELRDRIRKKIQLAYRRFIGLEVDDELINALYAATDE
SELAIARKRLDLALKSLDEAAIFTIHGFCQRILADMAFESSLLFESEFTLDDSEFLHHAV
RDFWREKCYPLNGSLADVIQAKFSEPDALSRQLRPLLGASNAVAAPTPEAFDKLEANLTQ
SLSRFKLIWPTEREQTETMLHALPLNGARFGKKADGYPKLAKMLDDIDNWVTFGQGLPPA
KALEALSLNSLKLNKGGEIPSAEQAPMLAHMERLTQLTSNLIPSFLYCARDGIAKRFAKQ
KLERNLLTPDDLLLTLAGALSASTDNSLASSISQRFPVALIDEFQDTDPLQFEIFNTIYQ
STASDSSPAQQDKLSLLMIGDPKQAIYAFRGADIHTYIQAREQTAKHYNLDTNYRSNRQM
VDAVNGIFSHRADPFISQSIPFEAVKASSFADKKSLKEQVEDKSALRLRVLSEESEKGLN
KTTARQLLADDVANEIALLLTDAQQNLCAIGDKPLKAKDIAVLVRDRHEANVIKSALSLR
QIGAVFLSRDSVFNTLEARELTLVLYAMADPKDERALRSALATSLLGYSAEAIHHFNQDE
DSRQTLLEQFAQLHQVWLKRGIMPALLTLASQTQIIERLLNAEEGERRLTDFRHLGELLQ
QKATELDGSSALINWFEQALIENQPSEEAQLRLESEQNLVQIVTIHKSKGLEYPICFVPF
VSLSRDNRKKPSPMLYHDNNKLIWDIEQSEEGWERQKRETLAEDLRLLYVALTRPVLKCY
LYIANHSRFTKKSGMSSQLHETAIGYLLGIEDKACDYERLLTQAKRLQASTPDAISLKEL
APAGSDVALSAEPIILARDESIETHFAPKVLKRPHLTPWRVGSYSGLVKHLAHEKVLPGA
DDEVFPEVDVIIDEVDNTPSRFTFERGANAGSFMHLVLELIDFTQAETDLDEQLPIAMSK
YGIDETWVEVLKLWYIDLLHAPLATDSSLKLAQLMPQQKLVEMEFYLPISALNADKLNAL
LTEFGYSAGLSFDDLQGMLKGFIDLTFEHNNQYFIADYKSNHLGDDLSQYHYSNMQQAIR
SHRYDLQYIIYTLALHRYLSLRMANYDYDLHMGGSFYLFLRGMSVNSPQSGVYYDKPPKL
LIEKLDALFTNSATQHCETLSMSAPTSGSMAQDNTSVEVK
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacaatccagtagaagatatgatcagtacagcagagcagccactcacagctaca
attgtgaccgagcctttagatacactgacgctgccttttggcggcagtcgcttaattgag
gccagtgcaggtactggtaaaacctttaccattgcgggtttatacgtacgtttactactc
ggtcatggtattgagtcaccgttaacctgtgagcaaatattggtggtgacctttactaat
gcggcaacgggggagcttagggatcgtattcgtaaaaagatccaactcgcctaccgacgc
tttatcggtctagaggtcgatgatgagttaatcaatgcgctttatgcagcaacagatgaa
agtgaactagctatcgcccgtaaacgtttagacttagcgcttaagtcactcgatgaggcc
gctatctttactattcatggtttttgtcagcgtattttggctgatatggcctttgagtcc
tctttattatttgagtccgaatttaccttagacgatagcgagttcttgcaccatgccgtg
cgggatttttggcgtgagaagtgttacccattaaatggcagtttagccgatgtgatccaa
gctaagtttagtgagcctgatgcactatcacgccaactgaggccactcttgggggccagc
aatgccgtagccgcccccacacctgaagcctttgataagctagaagccaatctcactcaa
agcttgagccgctttaaactgatttggccaacagagcgcgaacagactgaaaccatgcta
catgcattgccactcaacggggcacgttttggtaaaaaagcagacggctaccctaaactt
gccaaaatgctcgatgatatcgataactgggtaaccttcggccaaggcttaccccccgca
aaggcgcttgaggctttgtcactcaatagccttaaattaaataaaggcggagagatccca
tcagcagagcaagcacctatgcttgctcatatggagcgactcactcagttaacctcaaat
ttaattccaagctttctttattgcgccagagatggcattgccaagcgttttgccaagcaa
aaacttgagcgcaacctgctgacgcctgatgatctgctgctaacccttgctggtgcactt
agtgcgtcaacagacaatagcctggccagcagtattagccaacgctttcctgtggcatta
attgatgagttccaagataccgatccgttgcagtttgagatctttaacaccatttatcaa
agcacagcttctgatagcagcccggcgcaacaggacaagctcagcctgttgatgattggc
gatcccaaacaagcgatttacgcatttcgcggcgctgatattcacacctatatccaggcg
cgagagcaaaccgccaaacattacaatctagatactaactatcgctcgaatagacagatg
gttgatgccgttaatggcatttttagccaccgagcagacccttttatcagtcagtcgatt
ccgtttgaggccgttaaagcctcgagttttgccgataaaaaaagcctcaaagagcaagta
gaagataaaagcgcattaagactgagagtattaagcgaagagagcgaaaaaggcctcaat
aagacgaccgcgcggcagttattagccgatgatgtcgccaatgaaattgcgttattactc
acagatgcacagcaaaatctgtgcgctattggcgataagccgctcaaagcgaaagatatt
gccgtattggtcagagaccgccatgaagcaaatgtcattaaatcggcattaagcttacgc
caaattggcgcggtatttttaagccgagacagcgtgtttaataccttagaagcccgagag
cttacactcgtgctttatgccatggccgaccctaaagatgagcgcgcattaagaagtgcg
cttgccacatcactactcggttacagcgccgaggcgattcatcactttaaccaagatgaa
gatagtcgccaaacactgcttgagcaatttgcgcagctgcatcaagtgtggctaaagcgc
ggcattatgccggcgttattaaccttggccagtcaaacccagatcatcgagcgtttactc
aatgctgaagagggtgaacgacgtctaacagattttaggcaccttggtgaactgctgcag
caaaaagccaccgaactcgatggcagcagcgcactcattaactggttcgagcaagcgcta
attgaaaaccagccaagtgaagaggcgcagctgcgcttagaaagcgagcagaacttagta
cagattgtcactatccataagagtaaggggcttgaataccctatctgctttgtgccgttt
gtcagcttaagtcgtgataatcgtaaaaaaccttcacctatgctgtatcacgataacaat
aaacttatctgggatattgagcagagtgaggaaggctgggaacgtcaaaagcgtgaaacc
ttggccgaagatctgcgcttactctatgtcgcgctaactcgcccagtactcaagtgctac
ctgtatattgccaaccacagccgctttactaaaaagtcaggtatgagcagtcaattacat
gaaaccgctatcggttatttgctagggattgaagataaagcctgtgattatgaaaggctg
cttactcaagctaaacgattgcaagcttcaacgcccgacgccattagcctaaaagagctc
gcgcctgctggcagcgatgtcgcgctgagcgctgagccaataatcttggcaagagatgag
tctatagagactcactttgcccctaaagtgctcaaacgcccacaccttacaccttggcgt
gtgggtagttattctggtcttgtcaaacacttagcccatgagaaggtattgccaggcgca
gatgatgaggtctttccagaagtagatgtcattatcgatgaggttgataataccccctct
cgctttacctttgagcgcggcgcaaatgctggtagctttatgcacttggtgctagagcta
attgattttactcaggccgaaaccgatttagatgagcaattacccatcgctatgagtaaa
tatggcatagatgaaacttgggttgaggtgctaaaactatggtatatcgacctattgcat
gccccccttgctaccgatagttctttgaagcttgcgcaattaatgccacagcaaaagcta
gttgaaatggagttttatctgccgatatcagcccttaacgccgataaacttaatgccctg
ttaactgagtttggctatagcgcaggccttagctttgatgacttacaaggcatgttaaaa
ggctttatcgatttaacctttgagcataataatcagtactttattgccgattacaagtcg
aatcatctaggcgatgacttgagtcagtatcattacagcaatatgcaacaagccattcgc
tctcaccgttatgatctgcaatatattatctacacgcttgccctgcaccgctacctttca
ctgcgcatggcaaactacgattatgatctgcatatgggtggcagtttctatctgttttta
cgggggatgtctgttaatagccctcaatcgggtgtgtattacgacaagccgcctaaatta
cttatcgaaaagctagatgcgttatttacaaactcggcaactcaacactgtgagacactc
tcaatgtcagctccaacgtcaggctcaatggcacaagataatacctctgtggaggtcaaa
tga
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