Shewanella halifaxensis: Shal_1922
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Entry
Shal_1922 CDS
T00654
Name
(GenBank) Holliday junction DNA helicase RuvB
KO
K03551
holliday junction DNA helicase RuvB [EC:
5.6.2.4
]
Organism
shl
Shewanella halifaxensis
Pathway
shl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Shal_1922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shl03400
]
Shal_1922
Enzymes [BR:
shl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Shal_1922
DNA repair and recombination proteins [BR:
shl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Shal_1922
RecFOR pathway proteins
Shal_1922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RuvB_N
AAA_lid_4
RuvB_C
AAA
AAA_5
AAA_16
TIP49
AAA_3
AAA_14
AAA_22
Mg_chelatase
nSTAND3
RNA_helicase
AAA_2
AAA_24
DUF815
Rad17
AAA_17
AAA_18
Bac_DnaA
NB-ARC
NTPase_1
TsaE
AAA_25
NPHP3_N
NACHT
AAA_11
ATPase_2
ABC_tran
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ABZ76487
UniProt:
B0TSA7
LinkDB
All DBs
Position
2308754..2309767
Genome browser
AA seq
337 aa
AA seq
DB search
MIEADRLIHPQIIDREEAEAVDRAMRPKMLDEYTGQDDTRAQLKIFIEAAQKRGEALDHM
LIYGPPGLGKTTLAMIVANEMGVNIKSTSGPVLEKAGDLAALLTNLEPNDVLFIDEIHRL
SPVVEEILYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGATTRAGALTSPLRARFGIP
LRLEFYNVKDLSSIVARSAKVMALEIDDEGAVEIARRSRGTPRIANRLLRRVRDFAEVKH
SGDVTKVIAEAALDMLDVDAEGFDYMDRKLLLAIIDKFMGGPVGLDNLAAAIGEERETIE
DVLEPFLIQQGFIQRTPRGRIATPRAYNHFNIIKPDA
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atgattgaagctgaccgactcatacatcctcagatcatagaccgcgaagaagcagaagct
gttgatcgcgctatgcgtcccaagatgttggatgagtatactggccaagatgatactcgt
gcacaattaaaaatctttatcgaagcggctcaaaagcgcggcgaagcgttagatcatatg
ttgatttacggtccaccaggtttaggtaaaaccacattggcgatgattgtggccaatgaa
atgggtgtcaatatcaagtctacctctggacccgtgcttgaaaaagcaggcgacttagca
gcattgctaacaaaccttgagccaaatgatgtgttatttattgatgaaatccaccgtcta
agccctgtagttgaagaaattctatatcctgcaatggaagactatcagctggatatcatg
attggcgaaggccctgcagcgcgctcaattaaattagacttaccgccttttactttagtt
ggcgcaacgacacgagctggggccttaacctcgccgttaagagctcgatttggcattccg
ctcaggcttgaattttataacgtcaaagatctgtccagtatcgtggcacgctcagcaaaa
gttatggcgcttgaaatcgatgacgaaggcgctgtcgaaattgcgcgtcgatctcgtggt
acgccgcggatcgccaatcgcctgcttagacgagttcgagattttgccgaggttaagcac
agcggtgatgtcactaaagtaatcgcagaagcggcgctggatatgttagatgtcgatgct
gaaggttttgactatatggatagaaagctattgctagcgattatcgataaatttatgggc
ggtcccgttggcttagacaacttggctgcagccattggtgaagagcgagaaaccatcgaa
gatgtactcgagccgtttttgatccagcaaggctttatacagagaaccccaagagggcgt
atcgcgacaccaagagcttataaccactttaatatcattaagccagatgcctaa
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