Shewanella halifaxensis: Shal_2003
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Entry
Shal_2003 CDS
T00654
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
shl
Shewanella halifaxensis
Pathway
shl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Shal_2003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shl03400
]
Shal_2003
DNA repair and recombination proteins [BR:
shl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Shal_2003
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Shal_2003
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Helicase_C
UvrB_inter
UvrB_3rd
UvrB
ResIII
DEAD
AAA_30
Beach
AAA_22
DUF87
AAA_16
Kinesin
P-loop_SecA
AAA_5
Motif
Other DBs
NCBI-ProteinID:
ABZ76564
UniProt:
B0TT03
LinkDB
All DBs
Position
2415867..2417861
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AA seq
664 aa
AA seq
DB search
MSNSLLSQNKFILHSSYLPSGDQPEAIARLIDGIESGASHQTLKGVTGSGKTFTVANIIH
RLKRPTIILAHNKTLAAQLYSEMRHFFPENAVEFFVSYYDYYQPEVYLPGSDRFIRKDSA
INAHLERLRLSTTKALIERRDVIVVASVSSVYGLGDPDAYRSLQVKLSLGQAIETEELIE
RLERLQYGRCNRTIKRATFLVRDGAVDIFPADSEHKALTLELDDGHLNKLYWIDAVSGEK
LADVDEYYVSPKTLYSVSVEQVDLACEQIMKDMELQVASLSAENRLTEAARLYERTVSDL
ELLRLQGYCPGIENYASYLNQRDPKLPPTTLFDYLPKDGLLFIDESHVMVPQISAMYKSD
QSRKNTLIDFGFRLPSARNNRPLSFDEFESIKPQTIFVSATPGRYELSKSNSHIFKQIIR
PTGLLDPEIEIRPSENNLKDLVKEIELRVARNERTLVTTLTKKSAEALNDFIAARGIKVS
YLHSDVKTNDRVEIINALRAGELDVLIGINLLREGLDIPEASLVAVLDADHAGFLRSEQA
LIQIIGRAARNENGKAILYADKMTFAMQKAIDESSERRGHQMLYNMANGIVPSSSKRKLD
SGDQAHVVVGSVDRAKFCESLSELCRQITAKEKELLQLVDEEGAEQAKLIREQLIVLYRQ
FIYM
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtccaactctctactttctcaaaacaagtttatcctacactcaagttatctcccgtca
ggtgatcaacctgaagccattgcccgcttaattgatgggatagaaagcggagcctctcac
cagacattaaaaggcgtgacgggatccggtaaaacattcacggttgccaacataatccat
aggttaaaacgtcctacgattattttggcgcataacaagacattagccgctcagctctat
agtgaaatgagacattttttccccgaaaatgccgtcgagttctttgtttcttattatgat
tattatcagcccgaagtgtaccttccaggtagtgatcgttttattcgtaaagattctgcc
attaacgcacatttagagcgtttacgtttatcaacgaccaaagcattaatagaacgcaga
gacgttattgttgtggcgtcggtatcatcggtatatggccttggcgatcctgatgcatac
cgctccttacaggttaagctcagcctagggcaggcgattgaaactgaagagttaatcgag
cgattagaacggctgcagtatggccgttgtaatcgcaccatcaagcgggcgacattttta
gtgcgcgatggagcggttgatatatttcctgcagactctgagcataaggcactgaccctt
gaactcgatgatggccatctaaataagctctattggatcgatgccgtcagcggtgaaaaa
ctagcagatgtggacgaatattatgtgtcgccaaaaacgttgtactcggtgtctgtcgag
caggtggatttggcttgtgagcagatcatgaaagatatggagctgcaggttgcttcactc
tccgctgaaaataggttgaccgaggcggcgagattgtatgagcggacggtatcggatctc
gagctacttcgcctacaaggttattgtcccggcatagaaaattatgcatcctatctaaat
cagcgcgatcctaagctgccgccaaccacactgttcgattacctacctaaagatggctta
ctgtttatcgacgaatcccatgtgatggtgccgcaaatatcggcgatgtataagagcgat
caaagcaggaaaaataccttaatcgattttggtttccgtcttccctccgcccgaaataat
cgaccgctgagctttgatgagtttgagagcatcaaaccacaaaccatttttgtttccgct
acgccgggccgttatgaactgtcaaaatccaactcacatatttttaagcagatcatccgc
ccgacagggctactggatcctgaaattgaaatacgtccctcagagaataaccttaaggat
ttagtaaaggagatagagctaagagtggcgcgtaacgagcggacactagtaaccacctta
accaagaaaagtgcagaggcattaaacgactttatcgccgcaagagggataaaggtcagt
tacttgcactcagacgttaaaaccaatgacagagtcgagatcattaatgcgcttcgtgcc
ggtgagcttgatgtgctaatcggaattaacctattacgagaaggcttggatattccggaa
gcatcgctggtggcagtgctcgatgccgatcatgcaggctttttacgctccgagcaggca
cttatccagattatcgggcgagccgcccgtaatgaaaatggtaaggctatcttatatgcc
gacaaaatgacttttgcaatgcaaaaagccatagatgagtcttccgagcgccgaggccat
cagatgctgtataacatggctaacggcatagtgcctagttcatctaagcgaaaactcgat
tcaggcgaccaagctcatgtagttgtcggctcggtagacagagctaaattttgtgaaagt
ctatctgagctgtgccgacagatcaccgcaaaagagaaggagttactgcagttggtggat
gaagagggcgccgagcaagccaagcttattagagagcagctgattgtgctatatcgccag
tttatctatatgtaa
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