Shewanella halifaxensis: Shal_3116
Help
Entry
Shal_3116 CDS
T00654
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
shl
Shewanella halifaxensis
Pathway
shl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shal_3116
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shl03019
]
Shal_3116
Enzymes [BR:
shl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Shal_3116
Messenger RNA biogenesis [BR:
shl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Shal_3116
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
AAA_19
R_equi_Vir
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABZ77663
UniProt:
B0TQ71
LinkDB
All DBs
Position
complement(3801028..3802341)
Genome browser
AA seq
437 aa
AA seq
DB search
MLRLVPQNSTTILSFLCLKSRNTIVSFSSLSLSEKLLSVVAQKGYQQPTAIQAEAIPAIL
AGRDIMASAQTGTGKTAAFTLPLLQRLIDKSSSDEQSKAKRASVLVLAPTRELAVQVNTN
VSQYAVNTDVSSIVIYGGVSIDAQATKLAAGVDVIVATPGRLLDHVRRGTLNLSDIEYLV
FDEADRMLDMGFMDEINAILKQLPAKRQTLLFSATFSSAIFELSKKLLQKPLRIEVDKAN
SAANSIEQVVYAVDSERKTELLCHLINKSAWQQVLVFSRKKQTADLIAQKMLAAGIEAKA
FHGDLGQGAREQVLNDFKQGKIKALVATDVAARGLDIVELKVVVNYEIPFVAEDYVHRIG
RTGRAGNTGKAITLYSEDDALLLEEVESVIDKRLPQQWLEGFEPDLTKLEPVTRKNSKAA
QRQRAKKRALGADKRRR
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgcttagacttgtacctcaaaacagcaccacaatactgtcatttttatgtttaaaatca
aggaataccatcgtgtcattttcatcactgtctttaagtgaaaaacttctcagtgtggta
gcacaaaaaggttaccagcagcccacagccatacaagcagaggccattcctgccattttg
gctggccgagacataatggcaagtgctcaaacaggaacgggcaaaaccgcggcgtttacc
ttgcctttgctgcagcgtttaatcgataaatcatctagtgacgaacagagtaaagccaag
cgcgcttcagtgctggtattagcgccaactcgtgaacttgctgtgcaggttaataccaat
gttagtcaatatgcggttaataccgatgttagcagtatcgtgatatatggcggtgtgagt
attgacgctcaggcgacaaaacttgcagcgggtgttgatgttattgtcgcgactccggga
cgtttactggatcatgtacgccgtggcacattaaatttatctgatatcgaatacttggta
tttgatgaagccgatcgcatgttagacatgggatttatggatgaaattaatgcgatttta
aagcaactaccagccaagcgtcagacgctgttattttcagccacgtttagctcggccatt
tttgaactgagtaaaaagttactgcaaaagccgcttcgaatagaagtcgataaagcgaat
agtgccgcaaatagtatcgagcaagttgtttacgctgttgatagcgaacgtaaaactgag
cttttgtgtcacctgattaataagagcgcttggcaacaggtactggtttttagccgcaaa
aaacaaacggctgatctgatcgcacaaaaaatgttggccgcagggatcgaggctaaggca
tttcatggtgacttaggccagggcgcacgtgagcaagtacttaatgactttaagcaaggt
aagattaaagccttagtggcaaccgatgtggctgcgcgtggcttagatattgttgagtta
aaggtcgtcgttaactatgaaattccatttgtggccgaagactatgtgcaccgtattgga
cgcacaggccgcgctggcaatactggtaaagcaataacactgtacagtgaagatgatgcc
ttgttacttgaagaggtcgagtcagtgatagataagcgcttgccacagcaatggttagaa
ggatttgagcctgacttaactaagcttgagcctgttacacgaaagaatagcaaagctgct
cagcgccaaagagcaaagaagcgtgcgttaggtgcggataaacgtcgtcgataa
DBGET
integrated database retrieval system
