Shewanella halifaxensis: Shal_3142
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Entry
Shal_3142 CDS
T00654
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
shl
Shewanella halifaxensis
Pathway
shl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shal_3142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shl03019
]
Shal_3142
03016 Transfer RNA biogenesis [BR:
shl03016
]
Shal_3142
Enzymes [BR:
shl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Shal_3142
Messenger RNA biogenesis [BR:
shl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Shal_3142
Transfer RNA biogenesis [BR:
shl03016
]
Prokaryotic type
tRNA degradation factors
Shal_3142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_2
aRib
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
ABZ77689
UniProt:
B0TQ97
LinkDB
All DBs
Position
complement(3835129..3837243)
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AA seq
704 aa
AA seq
DB search
MVHVNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKFEEPGRDFFP
LTVNYQEKTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPNGFKNEVQVIITVV
SVDPEISPEVISMIGTSAALSISGIPFNGPLGSARVGYVNGEYILNPTVSQLVDSQLELS
VAGTDSAVLMVESEASALPEEVMLGAVVYGHDQQQVVIQAIKELQAEVNKPVWDWAAPVQ
DETLVAKIKDLAEAGLTEAYQIEVKQDRYAQVGVVKNAAKEALLAENPDANTREIDGLLG
SLEKKVVRGRIIAGNPRIDGREPDMVRALNVMAGVLPRTHGSSLFTRGETQALVTCTLGT
ERDAQKIDSIMGEYTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTA
EEFPYSVRIVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVL
SDILGDEDHLGDMDFKVAGTRDGITALQMDIKIEGITKEIMQIALQQAYGARVHILNVMD
QAIGSHRGDISEHAPRITTIKINPEKIRDVIGKGGATIRALTEETGTTIELDDDGTVKIA
SSNGEATKEAIRRIEEITAEVEVGTVYNGKVVRIVDFGAFVTILPGKDGLVHISQIAEER
VANVSDYLEVGQEVKVKVMEVDRQGRVRLSMKEAAPKADAPAAE
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggttcacgtgaatccaatcgtaaagagttttgaatatggtcagcacacagtcacatta
gagactggggttatcgcgcgtcaagcagatgcagctgttttggcaagtatgggtgataca
acagtattggttactgttgttggcaagaagtttgaagagccaggccgtgactttttcccg
ctaaccgttaattaccaggaaaaaacatacgcagcaggtaagatcccaggtggattcttc
aagcgcgaaggtcgtccatctgaaggtgaaacgctaacagcacgcctaattgaccgtcca
atccgtccactattcccgaatggttttaagaacgaagtacaggttatcattactgttgtt
tctgtagacccagaaatcagcccagaagttatctctatgattggtacttctgctgcactg
tctatttctggtattccatttaacggtccactaggctcggcacgtgtcggttatgtgaac
ggcgaatacatccttaacccaacagtttctcaactagttgatagccagcttgagctttct
gttgccggtactgacagtgcagtactaatggttgaatctgaagcaagcgcattgcctgaa
gaagtaatgttaggcgcggttgtttatggtcacgaccagcagcaagttgttatccaagca
attaaagagctacaagctgaagttaacaagcctgtatgggattgggctgcacctgtgcaa
gacgaaactcttgttgctaagatcaaagatttggctgaagctggtctaactgaagcttac
caaattgaagttaagcaagatcgttacgctcaagttggtgtagttaagaatgctgctaaa
gaagcattgttagctgaaaacccagatgctaatacacgtgaaatcgacggtcttctaggt
agcctagagaagaaagtggttcgtggccgtattatcgcgggtaacccacgtatcgatggt
cgtgagccagatatggttcgtgcacttaacgttatggctggtgtacttccacgtactcac
ggtagctcactgttcactcgtggtgaaactcaggcgctagtaacttgtactcttggtaca
gagcgtgatgcacagaagattgatagcatcatgggcgagtacactaaccgctttatgctg
cactacaacttccctccatactctgttggtgaaactggcatggtaggttctcctaagcgt
cgtgaaattggtcacggtaagctagcatggcgtggtattaacgcggttatgcctactgct
gaagagttcccatacagcgttcgtatcgtatctgaaatcactgaatctaacggttcaagc
tctatggcgtcagtttgtggtacttctcttgctcttatggatgcaggtgtaccaatcaag
acttcagttgcgggtattgcgatgggtctagttaaagaaggcgacgatttcgtagttctt
tctgacattctaggcgatgaagatcatcttggtgatatggactttaaagttgcgggtact
cgcgatggtattactgctctgcagatggatatcaagatcgaaggtatcactaaagagatc
atgcagattgctctacagcaagcatacggcgcacgtgttcatattctaaacgtgatggac
caagcgattggttcacatcgtggtgatatctctgagcacgcgccacgtatcacgaccatc
aagatcaaccctgaaaagatccgtgatgttattggtaaaggtggtgcaacgattcgtgca
cttactgaagaaaccggtactacgattgaacttgatgacgacggtacagtgaagattgca
tcttcaaacggcgaagcgactaaagaagctatccgtcgtatcgaagagatcaccgctgaa
gttgaagtgggtacagtttacaacggtaaagttgttcgtatcgtagattttggtgctttc
gtgacgattcttccaggtaaagatggtctagtacatatttctcaaatcgctgaagagcgc
gttgcgaacgtgtctgactacctagaagtaggtcaagaagttaaagttaaagtgatggaa
gttgaccgtcaaggccgtgtacgtctttctatgaaagaagctgcacctaaggctgatgcg
ccagctgctgaataa
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