Shewanella halifaxensis: Shal_3395
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Entry
Shal_3395 CDS
T00654
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
shl
Shewanella halifaxensis
Pathway
shl00061
Fatty acid biosynthesis
shl00071
Fatty acid degradation
shl01100
Metabolic pathways
shl01212
Fatty acid metabolism
shl02024
Quorum sensing
shl04146
Peroxisome
Module
shl_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
shl00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Shal_3395
00071 Fatty acid degradation
Shal_3395
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Shal_3395
09145 Cellular community - prokaryotes
02024 Quorum sensing
Shal_3395
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
shl01004
]
Shal_3395
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shl04147
]
Shal_3395
Enzymes [BR:
shl01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Shal_3395
Lipid biosynthesis proteins [BR:
shl01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Shal_3395
Exosome [BR:
shl04147
]
Exosomal proteins
Exosomal proteins of breast milk
Shal_3395
Exosomal proteins of breast cancer cells
Shal_3395
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_2
Motif
Other DBs
NCBI-ProteinID:
ABZ77941
UniProt:
B0TSI7
LinkDB
All DBs
Position
4139637..4141235
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AA seq
532 aa
AA seq
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MAYDSDSTLDLSRYASLIDLIELASARYGDKAAYSCLSKETSFNEINRYSRQFAAYLQQE
TNLVQGDRIAIQLPNITQYVIAAYGAIKAGMVLVNTNPLYTQRELIHQFNDSGAKALVVL
SDLLPTLTEVVETTSIETVISTHAMDLIAPQPQPEVPFDTVAFCDVLAKGEQLTYAPVIS
VHEQIAALQYTGGTTGLSKGAMLTHRNLIANAMQIKSRIGSRIVEGEEIFVAPLPVYHIY
AFMVNLVLYYERGGCSVLIPNPRDISGLITTLSKYPFTGFAGLNTLFVGLCHQPEFKVLD
FSHLKVTISGGTALTQAAATVWEQTTGCTISEGYGLSETSPVVSLNSPGFEQLGTIGKPV
IATQVKILDMDDNEVPTGSTGELAVFGPQVMLGYWNKPEETAKVMTQDGYFKTGDIAVAT
EKGFHKIVDRKKDMIIVSGFNVYPNEVEDILSNHDAILECAVIGIEDERSGEAVKAVIVL
NESHSDTLQAKSIIEAYCREQLAAYKVPKVIEFADALPKSTVGKILRRELRK
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atggcatacgattcagactcaacgctcgacctctcccgttacgcatcgcttatcgatctg
atcgaacttgccagtgctcgctatggcgacaaggctgcatattcatgccttagtaaagaa
actagctttaatgagatcaaccgttactcgcgtcagtttgccgcttacctgcaacaggaa
accaatctggtgcaaggcgatagaattgcgattcagctgcctaatatcacccaatatgtt
atcgcggcctatggtgctattaaggcaggcatggtgttggtgaatactaatcctctttat
actcaacgtgagcttatccaccagtttaatgactcgggtgctaaagccttggtggtattg
tctgacttattaccgacactgaccgaggtagttgaaactaccagcattgaaaccgttatc
tctacccacgcgatggacttaattgcgccacagccacaacctgaggtgcctttcgatacc
gtagctttttgtgacgtgctagcaaagggcgaacaacttacctatgcgccagtgatcagc
gtgcatgagcagattgccgcgctgcaatatactggcggcaccacaggcttgtcgaaaggg
gcaatgctgactcaccgtaatttaatcgctaatgcgatgcagattaagtcgcgcataggt
agccgtatcgtcgagggtgaagaaatttttgtcgcaccactgcccgtctaccatatctat
gcctttatggtgaacctagtgctctattatgagcgcggtggctgctcggttttgatccct
aatcctcgtgatatttcagggctcatcactactctatcaaagtatccatttaccggattc
gccgggctcaataccttatttgtaggtctttgccaccaaccagaatttaaggtgctggat
tttagtcaccttaaggtgacgatttctggcggtaccgcactcacccaagctgccgcgaca
gtctgggagcaaaccacaggctgcaccatatcagagggctatgggctctctgaaacctcc
ccagtggtatcgcttaactcgccggggtttgagcaactaggcaccataggtaaaccagtg
atagccacccaagtcaaaatcctcgatatggacgacaacgaagtgcccacaggtagcact
ggcgaactcgccgtatttggccctcaggtgatgctaggttactggaacaaaccggaagaa
actgccaaggtgatgactcaagacggttactttaaaaccggggatattgcggttgcaacc
gaaaagggatttcataaaattgtcgaccgcaagaaagatatgattatcgtctctggcttt
aatgtttacccaaatgaggtcgaagacatcttatctaaccatgatgccattcttgaatgt
gcggttatcggaatagaagacgagcgcagcggtgaagcagtaaaagcggttatcgtacta
aacgaatctcacagcgatacactacaagcaaagtcgattatcgaagcctattgccgtgag
caacttgccgcttacaaggtaccgaaagttatcgagtttgcagatgcactgcctaagtcc
accgtaggcaaaattttgaggcgcgagctacgcaagtag
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