Shewanella halifaxensis: Shal_3678
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Entry
Shal_3678 CDS
T00654
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
shl
Shewanella halifaxensis
Pathway
shl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shal_3678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shl03019
]
Shal_3678
03016 Transfer RNA biogenesis [BR:
shl03016
]
Shal_3678
Enzymes [BR:
shl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Shal_3678
Messenger RNA biogenesis [BR:
shl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Shal_3678
Transfer RNA biogenesis [BR:
shl03016
]
Prokaryotic type
tRNA degradation factors
Shal_3678
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
ABZ78219
UniProt:
B0TUV2
LinkDB
All DBs
Position
complement(4478957..4481440)
Genome browser
AA seq
827 aa
AA seq
DB search
MIQDPHIKREQEKYENPIPSREYILDYLRSQKSPLTREHIATALKIEGEEQLEAIRRRLR
AMERDGELVFTRGQSYGLPERMDLLTGTVIGHRDGFGFLKLEEGGDDLYINNRDMLMYFH
GDRVLAQKAGVDRKGRREARIVRLVEERNAALVGRFHLDAGMGFVIADDRRITQEILVPE
EDRKGARQGDIVVLELTRRPGRYVKAAGKVTEVLGKEMAPGMEIEIALRNYDLPHTWSGL
IEKKLRKIPDEVTEADKEGRVDLRQLPLVTIDGEDARDFDDAVYAEKKKSGGWRLWVAIA
DVSHYVRTESALDKEARARGNSVYFPSQVIPMLPEKISNGLCSLMPKVDRLCMVAEMTIS
AAGKLSGYKFYPAVMHSHARLTYTQVADMLEGGEVSDELKPIFPHLQTLQSLYLTLDETR
AERGAIAFETTETQFIFNEQRKIDKIVPRSRNQAHKIIEECMILANVASAKFVKKHKGEV
LYRVHESPSEQKLTNFKDFLKERGLTMEGGLEPEPKDYQAVMEQVADRPDAELIQVMLLR
SMRQATYTPDNEGHFGLALEEYSHFTSPIRRYPDLILHRVIRYLLAKQENTALTDQWTAD
GGYHYKIEELDQLGEECSTTERRADEATRDVNDWLKCEFMQDHVGDTFEAVIASVTHFGM
FVRLNDLFIDGLVHISSLGSDYYQYDNMRQRLVGEASGQVYQIGDTVTVKVAGVNLDDRQ
IDLMMEGDSAGGKRRRPTKPLTARERVNREGAKLGAKRESSRGKGAEGDSESKSETKRKP
SRSGAKSSGGKYKSGSSAAAKKTKTKASAKKSSASKAKSAKRKASKK
NT seq
2484 nt
NT seq
+upstream
nt +downstream
nt
atgatacaagatccgcatattaagcgtgagcaagaaaaatacgaaaaccctattccaagt
cgcgagtatattttagattacttgcgctcacaaaagtccccgttaacccgagagcatatt
gctactgctttaaaaattgaaggtgaagagcaactagaagctattcgtcgtcgcctgcgt
gcgatggagcgtgatggtgagttagtctttacccgtggccagtcatatggcttgccagag
agaatggacctgttaactggtactgtgattggtcaccgagatggctttggatttctaaag
ctagaagagggaggggacgacctttatatcaacaaccgtgacatgctgatgtatttccac
ggtgacagggtccttgcacaaaaagcgggcgtcgatcgtaagggtcgccgtgaagcgcgt
attgtacgtttggtagaagagcgtaacgccgcattagttggtcgctttcatctagatgct
ggcatgggctttgtgattgccgatgaccgccgcatcacgcaagagattttagttccggaa
gaagatcgcaagggcgcgcgccaaggcgatatcgtggtgcttgagctgactcgtcgaccg
ggccgttatgttaaagcggctggtaaagtgacggaggtgctcggtaaagagatggctccg
ggtatggagattgagattgcactgcgcaattacgatctgccgcacacttggtcaggcttg
atagagaagaagctgcgtaaaattcctgatgaagtgaccgaggccgataaagagggccgc
gtcgatctacgtcagttgccgctggtcactatcgatggtgaagatgcgcgtgactttgac
gatgccgtttacgctgagaagaaaaagtctggcggctggcgcctgtgggtggcgattgca
gacgtaagtcattacgttcgtacagagtcggcactggataaagaagcgcgcgcacgtggt
aactcggtgtatttcccatcgcaagttatccctatgctgcctgagaagatctctaatggt
ctgtgctcattgatgccaaaagtcgatcgtttgtgcatggtagctgagatgactatctcg
gcagcaggtaagctatcgggctataagttttatccggcagtgatgcattctcatgcgcgt
ttaacctatacccaggttgccgatatgcttgagggcggtgaggtaagcgatgagcttaag
ccaatatttccgcacctgcagacattacaatcactgtacctgacattagatgaaactcgc
gccgaacgtggtgcaattgcttttgaaaccactgaaacccagtttatcttcaatgagcaa
cgtaagatcgacaagattgtgccgcgcagccgtaatcaagcgcataaaattatcgaagaa
tgcatgatcttagctaacgttgcgtcagctaaatttgttaaaaagcacaaaggtgaagtg
ttataccgtgtgcatgagtcaccgtcagagcagaagctaaccaactttaaagatttcctt
aaagaacgtggcttgacgatggaaggtggtttagagcctgagcctaaagattaccaagcg
gtaatggagcaggttgctgatagacccgatgctgagctgattcaggtgatgttgctgcgc
tcaatgcgccaagcgacttatacaccagataatgaaggtcactttggtttggcgcttgag
gagtattcgcacttcacgtcgccaatccgtcgttacccagatttgatcttgcaccgagtg
atccgttacctacttgctaagcaagaaaatacagcattaaccgaccagtggactgccgat
ggtggttaccactacaagattgaagagctagatcagcttggtgaagagtgttcgactact
gagcgccgagctgatgaagcgacccgtgatgtgaatgactggcttaaatgcgagtttatg
caagatcacgttggtgatacttttgaggcggttattgcctctgtgacacattttggcatg
ttcgtgcgcttaaatgacctgtttatcgatggtctagtgcatatctcaagcctaggcagt
gattattaccaatatgataatatgcgccagcgtttagtgggcgaggcctcgggtcaggtt
tatcagattggtgatacggtaacggttaaagttgctggcgtgaacctcgatgaccgtcaa
attgacttgatgatggaaggcgactctgcaggtggtaaacgtcgtagaccaactaagccg
ttaaccgcgcgtgagcgagtgaatcgcgaaggtgcaaagcttggggctaagcgtgagtct
tctagaggtaaaggcgcagagggtgactctgagtctaagtctgagacaaaacgtaagccg
agtcgttcaggtgctaagtcgagcggcggtaaatataagagcggcagcagcgctgcagct
aaaaagactaagacaaaagcttcggcaaaaaaatcttcagcaagtaaagctaagtcagcc
aagcgtaaagcgagtaagaaatag
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