Shewanella halifaxensis: Shal_3858
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Entry
Shal_3858 CDS
T00654
Name
(GenBank) diguanylate cyclase/phosphodiesterase
KO
K18765
RNase E specificity factor CsrD
Organism
shl
Shewanella halifaxensis
Brite
KEGG Orthology (KO) [BR:
shl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shl03019
]
Shal_3858
Messenger RNA biogenesis [BR:
shl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Shal_3858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
GAPES4
YjcB
Motif
Other DBs
NCBI-ProteinID:
ABZ78398
UniProt:
B0TVU5
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All DBs
Position
complement(4679031..4680938)
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AA seq
635 aa
AA seq
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MKLTRILTKKLTSFWLMSLAGVAFICFLTAMVSFFQLTYTFQQQKVTELENLIEQQLSQQ
SSGQLDAWLPPLLKGYRAHSFTLSKGNQSLFEYQSPVPQGSGVNYKSQLAGGKLLMTLTL
PQPFSQGDIGWHEVLIIIIGCAAVFLFVRFGFRWFSMHLEGIEHLAQRSSLILSGKYDKA
LAEKGHGKPRLINRALTHLLLELDDAHKERARFDQFIRSNTFLDAGTGIGNRLFLKNRLD
ALSNHLGMMTPGVLYLFEMEDLDLFSKELTEQEVDELLSQLISTINQILANKANCIFSRR
SYNQFAVVVPQISQLEADQLAAKLLRLSLNQINTLVQLPDDFMHLGGAYFKVGDDKDALV
EEAELALRSAQFQGGSSWFMYDKGSVDGELSKGSVRWRSFLENVLVSKRVFLFSQPVVDS
DSHAHHQEVTCRLRDTQGNLVRATLFLPMAIKCGLTPQIERQVIEMVMFDLLPKHKDNSL
KFSINLSLDTLTSRAFVRWLKTTLLEYRHLAPRLIFEVNEDILVNHQKQLIAPLDMINKM
GASICVDRVGQQVVSTEYIHHYPISLIKLHRSIVNQIHLRAENQLFVRSLIAGLYRTDVQ
VCAEGVEVFEEWQTLQILGVSAGQGSFFSEPIEEV
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgaaactgactcgaattctgactaaaaaattgactagcttttggcttatgtcactcgca
ggtgtcgcattcatctgctttttgaccgctatggtcagcttttttcaacttacctatacc
tttcagcaacaaaaagtcactgaattagaaaaccttattgagcagcagctttcgcaacaa
agtagtggccagcttgacgcttggttaccgccattgcttaaaggatatcgagctcattct
tttacgttatctaaaggtaatcaatctctttttgagtatcagtctccggttcctcaggga
agtggcgttaattataagagtcaacttgctggtggaaagttattgatgacgctgacttta
ccgcaaccttttagtcagggggatattggttggcatgaggtcttgattatcataattggt
tgcgccgccgtattcttgtttgtccgtttcggttttcgttggttctcgatgcatcttgag
ggcatcgagcacttagcacaacgctcaagccttatcctatcgggtaagtatgataaggcg
ttggcagaaaaggggcatggcaaacctaggttaatcaaccgtgcgctaacccatctgttg
ctagagctagatgatgcccataaagagcgtgctcgtttcgatcaatttattcgctcgaat
acatttctagacgcaggtacagggataggcaatcgactgtttttgaaaaaccgactcgat
gctctcagtaaccatttaggcatgatgacgccgggtgtgctgtatctatttgaaatggaa
gatttggatttattcagtaaagagcttactgagcaagaagttgatgagctgttatcacag
ctgataagtaccataaatcaaatcctggccaacaaggcaaactgtatattttcgaggcga
tcatataatcagtttgcggtagtggtgccacaaatttcacaactagaagcggaccaactt
gccgctaagttactgcgtttaagccttaatcagattaataccttggttcagctgcctgat
gactttatgcatttaggcggggcatattttaaagttggtgatgataaagatgcattagtt
gaagaagctgaactcgcgttgcgttcagctcagttccaagggggaagtagctggtttatg
tatgataagggctctgttgatggtgaactgtcaaaaggctctgtgcgttggcgaagtttt
cttgagaatgtgttggttagcaaaagagtattccttttttcgcagccagtcgttgacagt
gactcccacgctcatcaccaagaggtgacctgtcgcttgcgagatacgcagggaaacctt
gttagagcaaccttgtttttgcctatggcgataaagtgcggcctaacaccacagatagaa
cggcaagtcatcgagatggtgatgtttgatctgttgccaaaacataaagataacagccta
aaatttagtattaacctgagcttagataccttaactagccgtgcctttgtacgctggttg
aaaaccacgctacttgaatatcgtcatttagccccaaggcttatctttgaggtgaatgaa
gatattttagtcaaccatcagaaacagcttatagcgccgttggatatgatcaataaaatg
ggcgcgagtatctgtgtcgatcgtgttggtcaacaagtcgtgagtaccgaatatattcac
cattatcctatctcgctaatcaaacttcatcgttctattgttaatcaaatccatctgcga
gcagagaaccaactgtttgttcgaagcctgattgcaggtctataccgcaccgatgtacag
gtgtgtgcagagggagtggaagtattcgaagaatggcaaacattacagattttaggcgtt
agtgctggccaagggagcttctttagcgaaccgatcgaagaggtatag
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