Shewanella sp. MR-7: Shewmr7_0004
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Entry
Shewmr7_0004 CDS
T00389
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
shm
Shewanella sp. MR-7
Brite
KEGG Orthology (KO) [BR:
shm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shm03032
]
Shewmr7_0004
03400 DNA repair and recombination proteins [BR:
shm03400
]
Shewmr7_0004
Enzymes [BR:
shm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
Shewmr7_0004
DNA replication proteins [BR:
shm03032
]
Prokaryotic type
DNA Topoisomerases
Shewmr7_0004
DNA repair and recombination proteins [BR:
shm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Shewmr7_0004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
HATPase_c
Toprim
GyrB_hook
HATPase_c_3
Caud_tail_N
Motif
Other DBs
NCBI-ProteinID:
ABI41010
UniProt:
Q0I0U5
LinkDB
All DBs
Position
3846..6263
Genome browser
AA seq
805 aa
AA seq
DB search
MSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDI
TITIHVDGSVSVRDDGRGIPVAIHPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVG
VSVVNALSKKLQLTIRREGKVHEQFYTHGVPDEPIKVIGDATKTGTEIRFWPSEETFSDV
EFHFEILAKRVRELSFLNSGVGIRLVDERDNKNEFFKYEGGISAFVDYLNRNKTPVNKDV
FHFMQEREDGITVEVAMQWNDGYQESIFCFTNNIPQRDGGTHLAGFRSALTRNLNNYMEN
EGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKAAVEQTMGEKLND
YLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLGGLPGKLADCQEKDPGLSE
IYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCGIG
RDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLFKVKK
GKQEQYLKDEAALTQYLTTQALDGTSIYPSQGAPGMSGEPLERLVTQYREVEAIVARLEQ
RYPTQITNRMLYHPMINNEMLADEGKMKEWIDAFIHELVELENSGVLYSGEPVLDPERKV
YLPKITIRKHGIDTHYLFSYDFFQSTDYQRIGKLGAALEGLIEVGGYVQRGERVKEVGSF
IEALDWTIGEAKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIDDAVGADQLFTC
LMGDQVEPRRDFIEANALNVANLDV
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagaatagttacgattcttcgagtattaaggtccttaagggccttgatgcagta
cgtaagagacctgggatgtatattggtgacaccgacgacggtacgggtctacatcatatg
gtgttcgaagtagtcgataactctatcgatgaagccttagccggccattgtactgatatc
actattactatccatgtggatggttcggtctccgttcgcgacgacggccgtggtattcct
gtggcgattcacccggaagaaggcgtgtctgccgccgaggtgatcatgacggtactgcac
gcgggcggtaagttcgacgataactcttataaagtgtcaggtggtctgcacggcgtgggt
gtatcggtagttaacgcgctgtctaaaaagctgcagttaaccattcgccgcgaaggaaaa
gtccacgagcagttttatacccacggtgtacctgacgagccaatcaaagtgatcggcgat
gcgactaaaaccggtaccgaaatccgtttctggccaagtgaagaaaccttcagcgatgtt
gagttccacttcgagattctggcaaagcgcgtgcgcgaactatcattcctcaactcaggc
gtgggtatccgcttagtcgacgagcgtgacaataagaatgaattctttaaatacgaaggc
ggtatcagcgcattcgttgattacctaaaccgtaataaaacgccagtaaacaaagacgta
ttccactttatgcaagagcgtgaagatggcattaccgttgaagtggcgatgcagtggaac
gatggttatcaagaaagcattttctgttttaccaacaacattccacagcgcgatggtggt
actcacttagcaggtttccgtagtgcgttgacacgtaacctcaacaactacatggaaaac
gaaggctataacaagaaaggcaaaactaacgcgacaggcgatgacgcccgcgaaggttta
acggccgtgatttcagttaaagtgcctgatcctaagttcagctcgcaaactaaagacaag
ttagtctctagcgaagtgaaagccgcggttgaacaaaccatgggtgaaaagctaaacgac
tatctgctggaaaaccctgccgatgccaagttaatcgtcggtaagattgtcgatgcggcc
cgtgcccgtgaagcggcgcgtaaagcccgtgaaatgacccgccgtaaaggtgctctcgat
ttaggtggtttgccaggtaagctggcggattgccaagagaaagaccctggtctttctgaa
atctacatagtggaaggggactctgctggcggtagcgctaagcagggacgtaaccgtaag
aaccaagcgattctgccactgaaaggtaaaatcttaaacgttgagaaagcgcgtttcgat
aaaatgctttcttctcaagaggttgcgactcttattaccgcacttggctgtggtattggt
cgtgacgaatacaacccggataagacgcgttaccacaacatcattatcatgacggatgct
gacgtcgacggctcgcacattcgtaccttgctgttgaccttcttcttccgccaaatgcct
gaactgattgaacgtggttatgtgtatattgctcagccgcctttattcaaagtgaagaaa
ggcaagcaagaacaatatctcaaagacgaagcggcactgactcagtatctgacgactcaa
gcgttagatggtactagcatttacccatctcaaggtgcacctggcatgtcgggtgagcca
ttagagcgtttagtgactcaataccgtgaagtggaagcgattgtggcccgtttagagcaa
cgttacccaacgcagatcaccaaccgcatgctttatcatccaatgatcaacaacgagatg
ttggcggatgaaggcaagatgaaggaatggatcgacgcctttatccatgagctggtggaa
ttagaaaacagtggtgtattgtattctggtgagcctgtactcgatcctgagcgtaaagtg
tatctgccgaagatcactatccgtaaacacggtatcgatacacactacctgttcagctat
gacttcttccaatcaactgactaccaacgcattggtaagttaggcgctgcgctcgaaggc
ctgattgaagtcggtggctacgtacagcgtggcgaacgtgtgaaggaagtgggtagcttt
atagaagctttagattggaccatcggcgaagccaagcgtggcctctatatccaacgctat
aaaggattgggtgagatgaaccctgagcaattgtgggaaactacaatggatcctgaatca
cgccgtatgctgcaagtgacgattgatgatgccgttggtgcggatcagctgtttacttgt
ttgatgggcgaccaagttgaaccacgccgtgactttatcgaagccaacgcgctgaacgtg
gcaaacttagacgtttaa
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