Shewanella sp. MR-7: Shewmr7_0531
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Entry
Shewmr7_0531 CDS
T00389
Name
(GenBank) Excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
shm
Shewanella sp. MR-7
Pathway
shm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
shm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Shewmr7_0531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shm03400
]
Shewmr7_0531
DNA repair and recombination proteins [BR:
shm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Shewmr7_0531
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Shewmr7_0531
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_DNA-bind
UvrA_inter
ABC_tran
SMC_N
AAA_16
AAA_29
nSTAND1
AAA_21
AAA_23
AAA_25
RsgA_GTPase
DnaJ_CXXCXGXG
nSTAND3
NACHT
T2SSE
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
ABI41534
UniProt:
Q0HZC1
LinkDB
All DBs
Position
complement(607880..610732)
Genome browser
AA seq
950 aa
AA seq
DB search
MDKIEIRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAY
ARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARVGEPRC
PTHGQPLAAQTVSQMVDKVLEMPEDSRLMLLAPVVNGRKGEHVKLLEGLSAQGYIRARID
GEVCDLTDPPALDLHVKHTIEVVVDRFKVRSDIQQRLAESFETALELSGGIAVVASMDEG
NTEELIFSANFACPHCGYSMAELEPRIFSFNNPAGACPTCDGLGVQQFFDPDRVITNPEL
SLAGGAIRGWDRRNFYYFQMLSSLADHYKFDVEVPFEQLSDKVRKIVLYGSGKDSIAFKY
INDRGDVVVRTHPFEGILNNMDRRYRETESNAVREELAKFINTQACQSCGGSRLREEARN
VFIGDLNLPKLTVWSIGEALDYFDKLEFSGQKAQIAEKVLKEVRDRLGFLVNVGLNYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLIHLRDLGNT
VIVVEHDEDAIRIADHIIDIGPGAGVHGGEVICDGPIEKIVACDESVTGQYISGKRNIHI
STPRTPYDPKQVIELYGARGNNLRNVDLTVPVGLFTCVTGVSGSGKSTLINDTFFRIAHK
QLNGATVDEPAPYDRIVGMEQCDKVVDIDQSPIGRTPRSNPATYTGIFTPIREIFAGTQE
SRTRGYQVGRFSFNVKGGRCEACQGDGLIKVEMHFLPDVYVPCDACKGKRYNRETLEVRY
KGKNIHEVLQMTVEDAREFFDAVPAIARKLQTLMDVGLSYVRLGQSATTLSGGEAQRVKL
AKELSKRDTGKTLYILDEPTTGLHFADIQLLLDVLHRLKSHGNTIVVIEHNLDVIKTADW
IIDLGPEGGGGGGTILVTGTPEEVAEHPTSHTARFLKPLLERDAKLAKQS
NT seq
2853 nt
NT seq
+upstream
nt +downstream
nt
atggataagattgaaatacgcggcgcacggacccacaatctcaaaaatatcaacctgact
atcccaagggataagttaatcgttatcacggggttatcgggttcaggcaaatcttcccta
gcatttgatactttatatgccgaaggccaacgacgttacgttgagtctctttctgcctat
gcccgccaattcttaagcttgatggaaaagcccgatgtcgaccatatcgaaggcttgagc
ccggcgatttccatcgaacaaaaatcgacgtcccataacccgcgctccactgtcgggact
atcaccgaaatttacgactatctgcgtctgttgtttgcccgtgtaggcgaaccgcgctgc
ccaactcacggccaaccccttgcggcgcaaaccgtgagtcagatggtcgataaagtgtta
gaaatgcccgaagacagccgcttgatgctgctggcgcccgtggtcaacggtcgtaagggt
gagcacgtaaaattactcgaaggcttatcggcgcaggggtatatccgcgcccgtatcgac
ggtgaagtctgcgacttaaccgatccaccagcactcgatttacacgttaagcacaccatc
gaagtggtggtcgaccgctttaaagtccgcagcgatattcagcaacgtctcgccgaatcc
tttgaaaccgcgctcgaactctccggcggaattgccgtggtcgccagcatggatgaaggc
aacactgaagaattaatcttctcggctaacttcgcctgtccgcactgcggttattcgatg
gccgagcttgagccacggatcttctcctttaacaacccagctggcgcttgcccaacctgt
gatggtttaggggtacaacaatttttcgacccagacagagtgatcactaatcctgagtta
tcccttgcgggcggcgcgattcgtggctgggatagacgtaacttctattacttccagatg
ctgagttcgctcgccgaccactataagttcgatgtcgaagttcccttcgaacagctgtcg
gataaggtgagaaaaatcgtcctctacggctcaggcaaagacagcatcgccttcaaatac
atcaacgaccgtggtgatgtggtggtgcgcactcaccccttcgaaggcatcttaaataat
atggaccggcgctaccgcgagaccgaaagcaacgcggtgcgcgaagaattagccaagttt
atcaatactcaagcctgccaaagctgtggcgggtcgcgcttgcgcgaagaagcccgtaac
gtgtttattggcgacctaaacctacccaaactcaccgtttggtcgataggtgaagcccta
gactacttcgacaaactcgagttcagcggccaaaaggcacagatcgccgagaaggtactg
aaggaagtgcgagatcgcttaggcttcctggttaacgtcggcctcaactatttaagtctg
tcgcgttcggccgaaaccctctcaggcggtgaagcgcagcgtattcgcctcgccagccaa
atcggcgcaggactcgtcggcgtcatgtatgtgctcgacgagccttctatcggcttgcac
cagcgagataacgaacggttattgcagaccttaatccaccttcgggatttaggtaacaca
gtaattgtggtggagcatgatgaagatgcgattcgtattgcggatcatattatcgatatc
ggccccggcgctggggtgcatggcggcgaagtgatttgcgacggcccgattgagaaaatt
gtcgcctgcgacgagtccgtgactggccaatatatttcgggcaaacgcaatatccatatc
agcactccacgtacgccttacgatccaaaacaagtgattgagctttacggcgctcgcggc
aataacctgcgcaatgtcgacttaacggttcccgtaggcctgttcacctgcgtgaccggg
gtatcgggttcgggtaaatcgacgctgattaacgataccttctttagaattgcccataag
caactcaacggtgccacagtcgatgagcccgcgccatacgatcgcatcgtcggcatggag
caatgcgataaagtggtcgatatcgaccaaagcccgattggtcgtactccgcgctctaac
cccgccacttatactggcatctttacgcctattcgggagatttttgctggaacgcaggag
tcccgtacccgtggttatcaggtgggccgtttctcctttaacgtgaaaggcggtcgctgt
gaggcctgccaaggtgatggcttaattaaggtcgaaatgcacttcctgcccgatgtgtat
gtgccttgcgatgcctgtaagggtaaacgctataaccgcgaaaccttagaggtgcgctac
aagggtaagaacatccacgaagtgctgcaaatgacagtggaagatgcgcgggagtttttc
gatgccgtgccagccattgcccgtaaactgcaaaccctgatggatgtgggtttgtcctac
gtacgtttaggccagagcgcgaccacgctgtcgggaggtgaagcccaaagggtgaaactc
gcgaaggaactctctaagcgcgatacgggtaagaccttgtatattctggatgaaccgaca
acgggcttgcactttgccgatatccaattgctgctcgatgtgctgcatcgcctcaaatcc
catggcaatactatcgtggtgattgagcataatctggatgtgattaaaaccgcagactgg
attatcgacttaggtccagaaggcggcggtggcggcggcactatcctagtaactggtacg
ccagaagaggtggcagagcatccaacgtcccataccgcgcgcttcctaaagccgctgctg
gaaagggatgctaagctagccaaacagtcataa
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