Shewanella sp. MR-7: Shewmr7_0838
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Entry
Shewmr7_0838 CDS
T00389
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
shm
Shewanella sp. MR-7
Pathway
shm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shewmr7_0838
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shm03019
]
Shewmr7_0838
Enzymes [BR:
shm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Shewmr7_0838
Messenger RNA biogenesis [BR:
shm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Shewmr7_0838
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
HI1480
Motif
Other DBs
NCBI-ProteinID:
ABI41837
UniProt:
Q0HYG8
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All DBs
Position
complement(952232..953881)
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AA seq
549 aa
AA seq
DB search
MSFSSLGLSLPIQKAVTEQGYDTPSPIQAQAIPAVLTGKDVMAAAQTGTGKTAGFTLPLL
ELLSKGNKAKAGQIRALVLTPTRELAAQVSESVETYGKYLPLRSAVVFGGVPINPQIQKL
RHGVDVLVATPGRLLDLVQQNVVKFNQLEILVLDEADRMLDMGFIRDIKKILALLPAKRQ
NLMFSATFSDEIRELAKGLVNQPVEISVTPRNAAANTVKQWICPVDKNQKSALLIQLIKQ
EDWQQVLVFSRTKHGANRLAKSLIQAEISAAAIHGNKSQGARTKALADFKSGEVRVLVAT
DIAARGLDIDQLPQVVNFDLPNVPEDYVHRIGRTGRAGASGQAVSLVSSEEFKLLRDIER
LINRVLERQEIEGFGPAHALPESTLIAHGKDNKVKAVASQRKHRSAGKPTPRTGTGRDGR
KTPDSIDGSAQQKNSNPNQGQRNNQGQHKRPQSSKNAEHKNTHSSTEAGRTPKPQDKRPQ
HGKGPANSEHKAKGQPHSAAQQPSPQARSEKQHSDSRRQGRTQPTANSASGEHKKPSHRP
DNRPNRVKS
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgagtttttcctccctaggtttatctttacccatccaaaaagctgttactgaacaaggt
tatgacacaccatctcccattcaagcacaggccatcccggccgttctgacgggtaaagac
gtaatggctgcggcccaaacaggaacaggaaaaaccgcaggttttaccctgcctttgctc
gaattactctctaaaggcaataaagccaaggcgggacaaatccgcgccctagtgctaacc
cccacgcgcgagttagcggctcaagtaagcgaaagtgttgaaacttatggtaaatatctt
ccattgcgctcagcggtcgtctttggtggcgtgccaattaatccccaaattcaaaagcta
cgccacggggtagatgtactggttgccacaccagggcgactcttagatctggtacagcaa
aatgtagtgaaatttaaccaactggaaatactcgtgttggatgaagcggatcgcatgttg
gacatgggatttattcgcgatatcaaaaagatcctcgcactcttacccgctaagcgacaa
aacctgatgttctcggcgaccttctccgatgaaatccgcgagctcgctaagggattagtg
aatcagccggtagaaatttcagttacaccacgcaacgccgcggcaaacacagttaaacaa
tggatttgccccgtcgataaaaatcaaaaatcggcgctgctgatccagctcatcaaacag
gaagactggcagcaagtcttagtgttttcacgcacaaaacacggcgccaacagactggct
aagagtcttattcaagccgagatcagcgctgccgctatccacggcaataaaagccaaggc
gcccgcaccaaggcattagccgactttaaaagcggcgaagtacgagtgctcgtggcgacc
gatattgcggcgcgcggactcgatatcgaccaattacctcaagtcgttaacttcgatctg
cccaatgtgccagaagattatgtgcaccgtattggccgtacagggcgagcgggggcttcg
ggccaagccgtgtctttggtcagcagtgaagaatttaagctgcttcgggacattgaacgt
ttaatcaaccgcgtacttgaaaggcaagaaattgagggtttcggccccgcccatgcacta
ccggaatcaaccttaatcgctcatggcaaagataacaaagtcaaagcggtggcgagccaa
cgtaagcaccgcagtgcgggcaaacctacgccaagaaccggcacgggtcgcgatggtcgt
aaaacgccagacagcatcgacggctctgcgcagcaaaagaactcaaatccaaaccaaggc
cagcgcaataatcaaggtcagcataagcgtcctcaatcctcaaaaaacgctgagcataaa
aatacgcactcaagtaccgaagctggtcgcacgcccaaaccacaggataaacgtcctcag
cacggcaaaggcccggctaatagcgaacataaagccaaaggccagcctcattcagcggcg
caacaacctagtccacaggctcgcagcgaaaaacaacattctgactcacgccgccaaggc
cgcactcagccgacggcgaattccgccagcggtgagcacaaaaagccttcgcatcgacca
gataaccgccctaatcgcgtaaaatcctaa
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