Shewanella sp. MR-7: Shewmr7_1093
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Entry
Shewmr7_1093 CDS
T00389
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
shm
Shewanella sp. MR-7
Brite
KEGG Orthology (KO) [BR:
shm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
shm03016
]
Shewmr7_1093
Enzymes [BR:
shm01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
Shewmr7_1093
Transfer RNA biogenesis [BR:
shm03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Shewmr7_1093
Prokaryotic type
Shewmr7_1093
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
ABI42092
UniProt:
Q0HXR3
LinkDB
All DBs
Position
1260125..1261078
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AA seq
317 aa
AA seq
DB search
MARRSKGRFIDGIVLLDKATGMSSNFALQRVKRFFNANKAGHTGALDPLATGMLPVCLGE
ATKFSQHLLDSDKRYLVTAKLGQRTDTSDSDGEVVQTRPLEFTEAQLMSALEHFRGDTQQ
VPSMYSALKYQGQPLYKYAREGIEVPREARPITVFELNFISLEGDELTLDIHCSKGTYIR
TIIDDLGEMLGCGAHVIMLRRTQVAHYPYDKMVTLEQLEALVAKAQEEQLDSSSLLDSLL
LPMDTAVADFPEVNVPDASAAYLMQGQAVRVSGLVADKLVRITLGTERRFVGIGKMNEDG
LLAPKRLVVIHDQAKAS
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggcgagacgttcaaagggtcgctttatcgacggtatcgtgttgttggacaaggccaca
gggatgagctccaactttgcactacaacgagtaaagcgcttttttaatgccaacaaagca
gggcacacgggggcactcgatcctttggcaacgggtatgctacctgtgtgtttaggcgaa
gcgactaagttttcgcagcatttgctcgattcggataagcgttatctggttaccgcaaaa
ctgggacaacgcacagatactagcgactctgacggtgaagtggtgcagactcgcccgctc
gaatttactgaggcgcagttaatgtccgccttagagcattttcgtggcgatacccagcaa
gtgccctccatgtattcggcgctgaaataccaaggccagcccttgtataagtatgcccgc
gaggggattgaagtgccccgcgaggcgcgtcctatcactgtcttcgagctgaacttcatc
agtctagaaggcgatgagctgaccttagacattcattgctctaagggcacttatattcgc
actatcatcgatgatttaggtgagatgctcggttgtggcgcccatgtgattatgctgcgt
cgtactcaagtcgcgcattatccctacgacaaaatggtcaccttggagcaactcgaagcc
ttagtcgctaaggcgcaggaagagcagcttgactctagcagcttgctggactcgttgttg
ctgcctatggataccgcggttgctgactttcccgaggttaatgtgcctgatgcaagcgct
gcttacttaatgcaaggtcaggcggtacgtgtctcaggactcgttgcagataagttggtg
cgcattacgttgggcactgagcgtcgtttcgtcggaattggcaagatgaacgaagatggt
ttactggcgcctaagcgcttagtcgtgatccacgaccaagctaaagcatcttaa
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