Shewanella sp. MR-7: Shewmr7_1096
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Entry
Shewmr7_1096 CDS
T00389
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
shm
Shewanella sp. MR-7
Pathway
shm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shewmr7_1096
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shm03019
]
Shewmr7_1096
03016 Transfer RNA biogenesis [BR:
shm03016
]
Shewmr7_1096
Enzymes [BR:
shm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Shewmr7_1096
Messenger RNA biogenesis [BR:
shm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Shewmr7_1096
Transfer RNA biogenesis [BR:
shm03016
]
Prokaryotic type
tRNA degradation factors
Shewmr7_1096
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
KH_2
S1_RRP5
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_2
Motif
Other DBs
NCBI-ProteinID:
ABI42095
UniProt:
Q0HXR0
LinkDB
All DBs
Position
1263809..1265908
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AA seq
699 aa
AA seq
DB search
MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEAEAGRDFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPNGFTNEVQVIITVVSVD
PQIEPDIISMIGTSAALAISGIPFSGPLGAARVGYINGEYVLNPTVTQLANSQLNLVVAG
TEGAVLMVESEAQALPEEVMLGSVVYGHDQQQVVIKAIAEFKAEAGKPAWNWTAPVANEA
LVAQVKELAEAGLAQAYQIQVKQERYAQVAVVKAAAKEALLAANPEVDLREVDGLLGSLE
KKVVRGRIIRGEPRIDGREPDMVRALSVLAGVLPRTHGSALFTRGETQALVTCTLGTERD
AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPTAEEF
PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDNFVVLSDI
LGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAI
GSHRDDISDHAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASSN
GEATKEAIRRIEEITSEVEVGRIYNGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN
VSDHLELNQEVTVKVMEVDRQGRVRLSIKEAQTKEAAAE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
gtgaatccaattgtaaagagttttgagtatggtcaacatacagtcaccctggaaacaggt
gtcattgcacgtcaagcagacgctgccgttttagctagcatgggtgacacgacagtgtta
gtcactgttgttggtaaaaaagaagctgaagccggtcgtgacttctttcctctgactgtt
aactatcaagaaaagacctacgcagcgggtaaaattcctggtggtttctttaagcgtgaa
ggccgtccttcagaagatgagacattaatcgctcgcctgatcgaccgtccgattcgtcct
cttttccctaatggtttcacaaacgaagttcaagtgatcatcactgtagtatccgtcgat
ccacaaatcgagccggatattatttcgatgattggtacttcggctgcgcttgccatttcg
ggtattccattcagcggtccattaggtgcggcgcgtgtgggttacatcaatggcgaatat
gtgcttaacccaacggttactcagttagcaaacagccaactgaacctagttgttgctggt
actgagggcgcggtattgatggttgagtcagaagctcaagccttaccagaagaagtgatg
ttaggctcagtggtttatggccatgaccaacaacaagtggttatcaaagcgattgctgaa
ttcaaagcagaagcgggtaaaccagcttggaattggactgcacctgttgccaacgaagcc
ttagttgctcaagttaaagaattagccgaagccggtttagcgcaagcgtatcaaattcaa
gttaaacaagagcgttatgctcaagttgctgtggttaaagctgctgctaaagaagcgctg
ttggctgcaaaccctgaagtggatttacgtgaagttgacggtctgctcggtagcttagag
aagaaagtggttcgtggtcgcatcatccgtggtgagccgcgtatcgacggtcgtgagcca
gacatggttcgcgcattaagcgtattagcaggcgtattaccacgtactcacggtagtgca
ctgtttacccgtggcgaaactcaagcactggtaacttgtactctaggtactgagcgtgac
gcacagaagattgatagcatcatgggcgagcgtactaaccgctttatgctgcactacaac
ttccctccttactcagtcggtgagacaggtatggtgggttcacctaagcgtcgcgaaatc
ggccacggcaagttagcatggcgcggtatcaacgcagtaatgccaacggctgaagaattc
ccatacagtgttcgtgtggtttctgaaatcacagaatctaacggttcaagctctatggca
tcagtgtgtggtacgtctcttgcgctgatggatgcgggtgttccaatcaagacttctgta
gcgggtatcgctatgggtctagtaaaagaaggcgacaactttgttgttctgtctgacatc
ttaggtgatgaagaccacttaggtgacatggacttcaaagtagccggtactcgtgatggt
gttactgcactgcaaatggacatcaagatcgaaggtatcaccaaagaaatcatggaaatt
gcactgcaacaagcctatggcgcacgtgtacatatcctgaacgtgatggaccaagcgatt
ggttcacaccgtgatgatatctctgaccacgctccacgtatcacaactatcaagatcaac
ccagagaagatccgtgatgttatcggtaaaggcggcgcagtgattcgtgctctgaccgaa
gaaactggtaccacaattgaactggaagatgatggtacagtgaaaattgcttcttcaaat
ggtgaagcgacaaaagaagcgattcgccgtatcgaagaaatcacttcagaagttgaagtg
ggccgtatctacaacggtaaagttatccgtatcgttgacttcggtgccttcgttaacatt
ctgccgggtaaagatggtttagtgcacatttcgcaaatcagcgatgagcgtgttgctaac
gtttctgaccaccttgaactgaaccaagaagtgactgttaaagtgatggaagtggatcgt
caaggccgtgtaagactgtcaatcaaagaagcacagactaaagaagccgctgctgaataa
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