Shewanella sp. MR-7: Shewmr7_1852
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Entry
Shewmr7_1852 CDS
T00389
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
shm
Shewanella sp. MR-7
Pathway
shm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Shewmr7_1852
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shm03400
]
Shewmr7_1852
Enzymes [BR:
shm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Shewmr7_1852
DNA repair and recombination proteins [BR:
shm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Shewmr7_1852
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ABI42843
UniProt:
Q0HVL2
LinkDB
All DBs
Position
complement(2175305..2179114)
Genome browser
AA seq
1269 aa
AA seq
DB search
MTKVSPALPLDPLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGLSEPLNCEQILVV
TFTNAATEELRDRIRRRIQVAFKCFLGLEINDPFVQALYDKTPEAERAIALRRFDLALKS
LDEAAIFTIHGFCQRILADLAFESSLLFESDFTLDDSEFLHHAVRDFWREACYPLPEYLA
QIIASEFGDPDGLVKQLRALLGASEAKPLQPVQPFARLAESLSQSVQRFKLAWPRGRDAL
LELLHSLPLNGQRFGKASDNYPKLAEMFDQLDNFLAFGHGLPPLKVLEALSLSELKLNKG
GVLPSASEAPLLDHMEQLAALINAIKPAFLYSAKQGISERFAKQKQQKNVLTPDDLLTTL
AAAMQANPDTLPKAVASRFPVALIDEFQDTDPLQFAIFSGIYQTRLGIDTQDPAAEPKPR
TDSKLSLLMIGDPKQAIYAFRGADIYTYIEARRQTQAHYFLDTNYRSSRNLVMGVNHLFA
QHSDPFISQSIPFDPVKTPASAAAKQLVEHAPNSAALRLKLLSEGETGLNKASARQTLAE
DTAAEITRLLTQAVNGQCSTPKGPLIAKDIAILVRDRNEAAVMKTALSKRQIGAVFLSRD
SVFETVEAREMALILRALASPKDERALRSALATALLGYRAEQIHAFNQDEEQRQRLLEQF
FELHQIWQKRGIMPALLSLANATQMVARRLHSPASTSTDQAEQDAEVHLEANNGERRLTD
FRHLAELLQQKATEIDGMSALLNWYEQQLIDNTGTDEQQLRLESEQNLVQIVTIHKSKGL
EYPVCFVPFVSLARDNRRRLTPMLYHRTNADGAQELVWDLEGTDEGWEQAKQETLAEDLR
LLYVALTRPVYLCYLYIANHSRMLKAGLKSQLHETAIGYLLGITDTDCDFSRLQHAAKAL
VAGLESSQPAISIEVVADDIEANKLHTGGSDSHTLSARKVSRQYRTPWRVGSYSGLVKNA
PHAKATPGADDEVNAVLGTDTANSAADPLWQEALLQEAADTQAQPLLNRFSFERGANAGS
FMHLVLELIDFTQAPIDLPRELPKAMLQYGIAPEWQPVLEDWYLEVLQAPLALMAQDNQL
INPELCLAALAPQHTLVEMEFYLPLNRLKDTELNQLLRQFGYDTELQFDELQGMLKGFID
LTFEYQGKFYIADYKSNHLGDNIQAYHHSALKQAISDHRYDLQYILYSLALHRYLAMRLP
NYDYDTHIGGCYYLFLRGMSVQYPGFGIYYDKPPKALILALDALFQRSLEATTDSNKKSD
AQLDTGAMA
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgactaaggtatcacccgctttgccgttagatccgctcaccctgccatttggcggcagt
cgcttaatcgaggccagtgcgggcacgggtaaaacctataccatttcaggcctgtatctc
agattactgcttggggatggcttaagcgaaccgcttaattgtgaacaaattctggtcgtg
acctttaccaatgccgccaccgaggagctgcgggacagaattcgccgccgcattcaggtg
gcctttaagtgtttcttagggcttgagattaacgatccttttgtgcaggcgctgtacgat
aagacccctgaagccgagcgcgctatcgccctaagacgcttcgatttggcgctcaaatcc
ctcgacgaagcggcgatttttaccattcacggattttgccaacggatcttggccgatctc
gccttcgagtcatcattgttgttcgagtcggattttaccttggacgacagtgagtttttg
caccatgcggtgcgggatttttggcgtgaggcctgttatccgctgccggagtatttagcc
caaattattgccagcgaatttggcgatcccgacggattagtcaagcagctgagagcattg
ctcggtgccagtgaggccaaaccgcttcaacccgtgcagccctttgctcgtttggcagag
tccttaagccagagtgtgcagcgctttaaactcgcttggccgcgtggccgcgacgcgctg
ttagagttacttcatagcctgccgcttaacggtcaacgttttggtaaggcaagcgacaat
taccccaaattggcggaaatgttcgaccaactggacaacttcttagcctttggccacggc
ttgccgccgcttaaagtgctcgaagcgctgtcgttatccgagcttaagctgaataaaggc
ggcgtgctcccaagtgcgagcgaggcgccactgcttgatcatatggagcagttagccgcg
ttgattaacgcgataaaacccgcatttctctacagcgccaaacaagggatcagcgagcgc
tttgccaagcaaaaacagcagaaaaatgtactgacacccgatgatctgctcactactttg
gccgcagcaatgcaggccaatcccgacactttgcctaaggcagtggcgagccgcttcccc
gtggcgcttatcgatgagttccaagatacggatccactgcaatttgctattttctcaggg
atctatcaaacccgtttggggattgatactcaagatccggctgctgaacctaagcctcgc
acggatagcaaattaagcctgctgatgattggcgaccctaaacaggcgatttatgctttc
cgcggcgccgatatttacacctatatcgaggcgcgcagacaaacccaggcgcactatttc
ctcgacactaactatcgctcgagtcgcaatctggttatgggggtgaatcatttatttgcc
cagcattcggatccttttatcagccaatcaattcccttcgatccagtcaaaacacctgcc
agtgcggcagccaaacaactcgttgagcatgcgcccaatagcgccgcgctacggttaaaa
ctcttgagtgaaggcgaaactggacttaataaggccagtgcgcggcaaaccttggccgaa
gacaccgccgccgaaatcacccgtttactgacgcaggccgtcaatggtcaatgcagcacg
cccaaagggccattaattgccaaagatatcgccatcttagtacgcgatagaaacgaagcg
gccgtgatgaaaaccgcgctgagcaagcgccagattggtgccgtctttttaagtcgcgac
agcgtatttgaaaccgtcgaagcgcgggaaatggcgctcattctgcgcgccttggccagc
cccaaggacgagcgcgccctgcgtagcgcccttgcgaccgccctgcttggttatcgcgcc
gaacaaattcatgcctttaaccaagatgaagagcagcgccaaaggctgctagagcagttt
tttgagctgcaccagatctggcaaaaacgcggcattatgccggcgctgctcagcctagcc
aatgccacccagatggttgcgcggcggctgcattctcccgcttcgacaagcactgaccaa
gcggagcaagatgcggaagttcatcttgaggcgaacaatggcgaacgtcgactcacggat
tttcgccacttagccgagctgttgcagcaaaaggcgaccgaaattgatgggatgagtgcc
ctgctcaactggtatgagcaacaactgattgataatacagggacagatgagcagcagcta
cgccttgaaagcgagcaaaacttagtgcaaatcgtcactatccataagagtaaggggctg
gaatacccagtgtgcttcgtgccctttgtcagcctcgcgcgggataatcgccgccgcctg
acacctatgctctaccacagaaccaatgccgatggcgcgcaggaactggtgtgggattta
gaaggcacggatgaaggttgggaacaggcaaagcaggaaaccttagccgaagatctgcgt
ctgctctacgtggcgctcacccgccccgtgtacctgtgttatttgtacatcgccaaccat
agccgcatgttaaaggcagggcttaaaagccagctgcatgaaaccgccatcggttatttg
cttgggatcactgacactgattgtgatttttcgcgtctgcaacatgccgccaaggcgctg
gtcgcgggtctcgagtcgagtcagcctgcgatcagcattgaggtggtggccgatgacatt
gaggctaacaagctgcatacggggggaagtgattctcataccttgagtgcccgtaaggtc
agccgtcagtatcgcaccccatggcgcgtcggcagttattccggtttagttaaaaatgcg
ccccacgctaaagccacacccggcgccgatgatgaagtcaacgccgtattgggtacagat
accgcaaacagcgcagctgatcccttgtggcaagaggctttgttgcaagaggctgccgat
acacaagcgcaacctctgcttaatcgctttagttttgagcgcggcgccaacgcgggtagc
tttatgcacttagtgcttgagttaattgattttacccaagctccaatcgacctaccccga
gagctacctaaggccatgttgcaatatggcattgcccccgagtggcaacccgtattagaa
gattggtaccttgaggtattgcaagctccgctggcgttaatggcgcaggataatcaactt
atcaatcccgaactctgtttagccgcactcgcgccgcagcacaccttagtcgagatggag
ttttacctgcctctgaatcgcttaaaggatactgagcttaaccaactccttaggcaattt
ggctacgataccgagctgcagtttgacgagttacagggcatgcttaagggctttatcgac
ttaacctttgaatatcaaggaaagttttatatagcagactataagtcgaaccatctgggg
gataatattcaggcctatcatcatagcgcgctaaaacaggcgattagcgaccataggtat
gatttgcaatatattctctactcccttgcgctgcaccgctatttagcgatgcgcttgccc
aattatgattacgatacccatattggcggctgttattatttgtttttacggggaatgtcg
gtgcaatatccaggctttggtatttattacgataaaccgcccaaggcgctaattttggcc
ttagatgcgctgtttcagcgcagtctagaggcaacaactgactcaaataaaaagtccgat
gctcaactggatacgggagcaatggcatga
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