Shewanella sp. MR-7: Shewmr7_1853
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Entry
Shewmr7_1853 CDS
T00389
Name
(GenBank) exodeoxyribonuclease V, gamma subunit
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
shm
Shewanella sp. MR-7
Pathway
shm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Shewmr7_1853
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shm03400
]
Shewmr7_1853
Enzymes [BR:
shm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Shewmr7_1853
DNA repair and recombination proteins [BR:
shm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Shewmr7_1853
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
ABI42844
UniProt:
Q0HVL1
LinkDB
All DBs
Position
complement(2179114..2182818)
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AA seq
1234 aa
AA seq
DB search
MLKLIQSNQMEVLCAHLAAYLRQPLPGAGLLQNEHILVQSPGMSTWLRLEIAKQNGIAAA
LEFPLPSSFIWQLCHDLLPNVPKENAFTKAAMTWKLMQLLPRLLDEPSFGPLRHYLGHTL
DNLESSAADTHSNHQHGAVSADDIKLYQLCGRIADIFDQYLVYRPDWIAAWEANEPLESL
KLNEEQSWQPILWRALIAYNRDELRQSHYHRANLHQDLIAALGDSTNSLAKLPQRLFVFG
ISSMAPQTIDVLHQLASRIDVIILSLSPCQHYWGDIIDPRHRARMALQYAGKRQLAEQWE
DKLEVGNPLLANNGKMGRELLDMLLELPPEHCDFGDDVYCQPCGDPNDPHARASMLAGVQ
YDILEMQTLDRVLGPDAELYQEVANRRVLTADDDSILIKSCHSPLREVETLHDHLLDLLD
SDNQLTPKDIVVMMPDVAAYAPYIDAVFAAKQGLEYIPYAIADRGAAQESPLINSFLNLL
NINQSRFGLTDILSILEVPAILRRFQLEEDELPLIRRWLDEAGVRWGRDEQSRLKQGVPA
FEQNSWAFGIKRLILGYALRDDAPLYQSSPQGMHYLTVAGVEGQSAQALGKLLNFIEVLD
ETTQVLAKAQAPSLRLLELTELLNAFYAPDEDEREQLQEIRDAIAALEQELLAASPADMG
PQANDLDLSIEVLALWFNQRLTESRVGQRYLAGSVNFCTLMPMRSIPFKVVCLLGMNDGV
YPRVQHPVGFDLMAHFGARKGDRSRRLDDRYLFLEALLSARELLYISYIGRSERDNSERI
PSMLVSELIEYCQLCYLPESLAAEASTVSNEVAQQALLEAIVSHQPLQPFDPKLYQAALP
QAPTFHGIKQSYSQQWCPPDSHSQLHHGRFIEAHTQIVLEDDAIGDSVQDIEPLGEAEHV
DISAFIRFFRNPAQYFFNRTLKVDLNLNIQADDNDEPFSLNALERYLLQAQLLGDALEQG
QNEPSAELLQRLKASGNLPMQPFDDLLLRQYSHDIAPLIGRTLFMRGDVAPRHADIRLSF
ELPHQNAGSQLKAKRVILEGRIDDISPKGLVTCRPGSAHGRDILALYLRHLCLMAAGVAQ
PSYLQPSYLLDMGHFHALAPITPALAHAQLANLLQLFYQGQIHPLCFMPRTSLAYASAEA
DEEEDPHTSKDPHKARLEAAQSEWLDEQGELGEGTDPHYQRLFHFPDDFTEAHFGKLADD
IYRPMLSLYHKDTLAQLEEFALNEAPTATTEGAH
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgctgaagttaatccaatccaatcaaatggaagtgctctgtgcccatcttgccgcgtat
ttacgccagccgctacccggcgcggggttattgcaaaatgagcatattttggtgcaaagc
cccgggatgtcgacttggttacgccttgaaattgcaaaacaaaatggtattgccgccgcg
ctggagttcccgctaccttccagctttatttggcaactgtgccacgatttactccccaat
gtccccaaggaaaacgccttcactaaggcggcaatgacctggaagctgatgcaactactg
ccgcggctactggatgaaccttcctttgggccactgcgccattatttgggtcatacctta
gataatctggaatcgagcgcggctgacacccatagcaaccatcaacatggtgccgtaagc
gccgatgatattaagctttaccaactttgcggccgcatcgccgatatcttcgaccaatat
ttggtttaccgccccgactggattgccgcgtgggaagccaatgaaccgcttgagtcactc
aaattgaatgaggagcaaagctggcaacccatcctctggcgcgcgctgattgcctacaat
cgcgatgagctgcgtcaaagccactaccacagggccaatctacatcaggatttgattgct
gcattgggggatagcaccaattccctcgcaaaattgccgcagcgtttatttgtgtttggg
atctcctccatggcgccccaaaccatcgatgtgctccaccagctcgcgagccgtatcgat
gtgattatcttaagccttagcccctgtcagcattactggggcgacattatcgacccacgc
catcgggcgcgtatggcattgcaatatgccggaaaacgccaattagccgagcaatgggaa
gataaactcgaagtcggcaatcccctactcgccaacaatggcaagatgggccgcgaatta
ctcgatatgctgctcgaactgcccccagagcactgtgactttggcgacgatgtgtactgc
cagccctgcggcgatcctaacgatccccacgctcgcgccagcatgctagccggggtgcaa
tacgatattttagaaatgcagacactcgatcgggtactcgggccagatgctgagctatat
caagaggtcgcgaatcgccgagtattaacagccgacgatgattcgattctaatcaagagt
tgccacagcccacttagggaagtcgaaaccctgcacgatcatttactcgacctgctggat
agcgacaaccaactcacgcccaaagacatagtggtcatgatgccggatgtcgccgcctac
gccccctatatcgatgcggtgtttgcagccaaacagggactggaatatatcccctacgcc
attgccgaccgcggcgcggcgcaggaatcgccactcataaatagctttttgaatttactc
aatattaatcagagccgtttcggactgacggatattttaagcattctcgaagtcccagcc
attttgcgacgttttcagctcgaagaagacgagctgccactcattcgccgctggttagat
gaagccggtgtgcgttggggccgcgatgaacagagccgccttaaacagggcgtgcctgcc
ttcgagcaaaactcctgggcctttggcataaaacgcttaatcttaggctatgccttaagg
gacgatgcgccgctatatcaatcatctccgcagggaatgcactatttaacggttgcaggg
gtggaggggcaatcggcacaggcccttggcaaactgttgaattttattgaagtcctcgat
gagaccacccaagtattagccaaggcgcaagcgccctcactgcggttactcgaactcacc
gagctgttaaatgccttttacgcccccgatgaggacgaacgagagcagctgcaagaaatt
cgcgatgcgattgccgccttagagcaagagctgcttgccgcgagcccagccgatatgggc
ccacaagccaacgacttagatttaagcatcgaagtactggcgctttggtttaatcaacgc
ttaaccgagtcacgtgtcggccaacgatacctcgcgggcagcgtaaatttttgtacctta
atgccgatgcgctcgattcccttcaaggtcgtttgcctgctggggatgaatgatggtgtc
tatcctagggtgcaacatccagtgggctttgacctgatggcccattttggtgcgcgcaaa
ggcgatcgttcccgcagattagatgatagatacctgtttttagaggcgttactctcggcg
cgggagctgctttacatcagttatattggccgtagcgaacgggataactcggagcgtatt
ccatctatgcttgtctccgagctaatagaatattgccagttatgttatctgcctgaatcc
cttgcggcagaagcttctactgtcagtaacgaagtcgcccaacaggcattacttgaggct
attgtgagccatcagccgctgcaaccttttgatcctaaactgtatcaagcagcactgccg
caagcccccaccttccacgggataaaacagagttatagccagcagtggtgtccgcccgat
agtcacagtcagttgcatcatggccgatttattgaagcccatacccagatagtgctcgaa
gatgacgcaattggtgatagtgttcaggatattgagccccttggcgaagctgagcatgtc
gatatctcggcctttattcgcttctttcgcaatcccgcgcagtatttctttaatcgtacc
ctgaaagtcgatttaaacctgaatattcaagcggatgacaacgatgagccctttagtctt
aatgcgttagagcgttatttattacaggctcaactccttggcgatgcgcttgagcaaggg
caaaacgaacccagcgctgaactgttacaacgccttaaggccagcggtaatttgccgatg
cagccctttgatgatctgctgctgcgccaatacagccatgatattgcgccgctgattggc
agaaccctgtttatgcgcggcgatgtcgctccccgccatgccgatattcggctcagcttt
gagttaccccaccagaacgctgggtctcagttaaaagccaagcgggtgatcctcgaaggt
cgaatcgatgatatcagccctaagggattggtcacttgccgccccggcagtgcccatggg
cgggacattttagccttgtatttgcgtcatttatgtttgatggccgcaggagtggctcaa
cctagctacctgcaacctagctatctgctggatatggggcattttcatgccctcgcgccc
attacgccagcgcttgcccatgcgcagctcgccaacttattacagcttttttatcagggc
caaattcatcccctgtgttttatgccaagaacctccctcgcctatgccagcgctgaggcg
gatgaagaggaagacccacacacaagcaaagacccgcacaaagcccggctcgaagcggcc
caaagcgaatggctggacgagcaaggtgaacttggtgaaggcacagatccccattatcag
cggctgtttcattttcccgacgactttaccgaggcacattttggcaaactcgccgatgac
atctatcggccaatgcttagcctgtatcacaaggataccctcgcccaactcgaggaattt
gccctgaatgaagccccaaccgccacaacagagggagcgcactga
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