Shewanella sp. MR-7: Shewmr7_2254
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Entry
Shewmr7_2254 CDS
T00389
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
shm
Shewanella sp. MR-7
Pathway
shm00061
Fatty acid biosynthesis
shm00071
Fatty acid degradation
shm01100
Metabolic pathways
shm01212
Fatty acid metabolism
shm02024
Quorum sensing
shm04146
Peroxisome
Module
shm_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
shm00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Shewmr7_2254
00071 Fatty acid degradation
Shewmr7_2254
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Shewmr7_2254
09145 Cellular community - prokaryotes
02024 Quorum sensing
Shewmr7_2254
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
shm01004
]
Shewmr7_2254
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
shm04147
]
Shewmr7_2254
Enzymes [BR:
shm01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Shewmr7_2254
Lipid biosynthesis proteins [BR:
shm01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Shewmr7_2254
Exosome [BR:
shm04147
]
Exosomal proteins
Exosomal proteins of breast milk
Shewmr7_2254
Exosomal proteins of breast cancer cells
Shewmr7_2254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Pept_S41_N
Motif
Other DBs
NCBI-ProteinID:
ABI43242
UniProt:
Q0HUG3
LinkDB
All DBs
Position
complement(2673127..2674800)
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AA seq
557 aa
AA seq
DB search
MDQPWINHLPKDVPAEINVDQYSSLVDMFETAVAKYADQPAFINMGATLTYRKLEERSRA
FAAYLQNELKLQKGDRVALMMPNLLQYPIALFGILRAGMVVVNVNPLYTPRELKHQLVDS
GAKAIVVVSNFARTLEEVVEQTPVKSVIITSLGDQLSAPKRTLVNFVVKYIKKLVPKYDL
PHALSMRETLSRGRRMQYVKPVITGDDLAFLQYTGGTTGVSKGAMLTHRNVVANVLQANG
AYSPALRDGSEFVVTALPLYHIFALTVNCLLFLHKGSQNLLITNPRDIPGFVAELKKYPF
TALTGVNTLFNALVNSSDFAELDFSRLKLSIGGGMAVQKAVADKWQSITKTRLLEGYGLT
EASPLLTCCPYNLDGYNGSIGFPAPSTLIQVRDDAGNVLPQGETGELFGKGPQIMKGYWQ
RPEETAKVIDKDGWLATGDIGYMDEQGFFYIVDRKKDMILVSGFNVFPNEVEEVVALHPK
VIEVAAVGVPNDASGELVKVFVVAKDKSLTADDIIKHCRAHLTGYKVPKLVEFRDELPKT
NVGKILRRELRDEVKRA
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
gtggatcagccttggattaatcatttgccaaaagatgtgcctgctgagattaatgtggat
cagtattcatcactcgtcgatatgttcgagacagcggtggctaaatatgcggatcaacca
gcatttatcaacatgggagctacgctaacttaccgtaaacttgaagaacgcagccgcgcg
tttgccgcctatctgcaaaacgaattgaaactccaaaagggtgaccgcgttgccctgatg
atgccgaatttgctgcaatatcccattgcgctgttcggcattttacgtgcgggcatggta
gtggttaacgttaacccactttacactccgcgcgaattaaagcaccaattagtcgactcg
ggcgctaaggctattgttgtggtatcgaactttgcccgtaccttggaagaagttgtcgaa
cagacacctgtaaaaagcgtgattatcacaagtttaggtgaccaactcagtgcgccaaaa
cgcaccttagttaactttgtggttaaatacatcaaaaaactagtgcctaaatacgatcta
ccccatgcactctcgatgcgcgaaaccctctcaagagggcgccgtatgcagtatgtcaaa
ccggttatcacgggtgatgacttagcctttttgcaatacacaggtggtacgactggggtg
tcaaagggcgccatgttgacccacagaaacgtggtcgcaaacgtattgcaggcgaatggg
gcttactccccggcactacgtgatggcagtgagtttgtggtcactgccttaccgctttac
catatttttgcattaacagtgaactgcttactgtttttacataagggcagtcagaacctg
ttaatcactaaccctcgcgatattccagggtttgtggctgaactcaagaaatatcccttt
accgcgcttacgggcgtcaacaccctgtttaatgcgttagtgaacagtagcgattttgct
gaactggacttttctcgcctcaaattatccattggtggcgggatggcggtacaaaaagcc
gtagccgacaaatggcagagcatcaccaaaacccgcttactcgaaggttatggtttaacc
gaagcgtcaccgctactcacatgctgcccctataacttagatggctacaacggttctatc
gggttcccggcaccatcaaccttaattcaagtacgtgatgatgcgggtaatgtgttaccg
caaggtgagacgggtgagctgtttggtaaaggcccacaaatcatgaaaggctattggcag
cgtccagaagagaccgccaaagtgattgataaagacggctggctcgccacgggcgatatc
ggttatatggatgaacaaggtttcttctatattgttgatcgtaagaaagacatgatttta
gtttcgggcttcaacgtcttccccaatgaagtcgaagaagtggttgctttgcatcctaaa
gtcattgaagtggccgcagttggggtaccaaatgacgcgagcggtgaattagtaaaggtg
tttgtggtggcaaaagataaatctttaaccgctgacgacatcattaagcattgccgcgcg
catttaacgggatataaagtaccgaagctggtagaatttagggatgagttacctaaaacc
aacgtgggtaagatcttgcgacgagagcttcgagacgaagtgaagcgcgcgtaa
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