Shewanella sp. MR-7: Shewmr7_2392
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Entry
Shewmr7_2392 CDS
T00389
Name
(GenBank) Peptidoglycan-binding domain 1 protein
KO
K21470
L,D-transpeptidase YcbB
Organism
shm
Shewanella sp. MR-7
Brite
KEGG Orthology (KO) [BR:
shm00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
shm01002
]
Shewmr7_2392
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
shm01011
]
Shewmr7_2392
Peptidases and inhibitors [BR:
shm01002
]
Cysteine peptidases
Family C82
Shewmr7_2392
Peptidoglycan biosynthesis and degradation proteins [BR:
shm01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
Shewmr7_2392
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Gene cluster
GFIT
Motif
Pfam:
Scaffold
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
ABI43378
UniProt:
Q0HU27
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Position
2832480..2834162
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AA seq
560 aa
AA seq
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MMHFNQFKSALLLILTLVSTNVFASNLELEALLEPLSTGERVKVDNTQIISAKLLSRVYQ
VRQYQPLWQDRDYAGTMLDVIKSADEEGLAKEDYHYSKLLELHQQLRASSWQDEYRSNVF
EVLLSDGIITYAIHLLNGKVNPSMLGKTWNYDETHLDFDTTLKQLEEHIKAHTVADAIAG
LAPKIAPYQQLKQYLAQYKDLAARYPFSPIPYTEVIKPGSTSPSVQGIATRLTELGYLAA
SAPADNSAAVSQPLTYDSTLEAAVRQFQTDHSLKADGVIGAGTMAALNVPYSQRVEQIRI
NLERARWLSANLRANYLIVNLAGYELLLFKDNSLSWRTDIIIGKINAKTPLFKSKLKYVV
VNPTWTVPRSISTEIINHLRKDPDYLQKKHFKVVEGSGTPVDASGIDWHSMTRKNFPYWF
VQEPGEDNSLGVVKFIFPNQYSIYLHDTPAKSLFEQTDRAFSHGCIRVKDPLVLADKLLS
ANANWSSNTLSSKLSEGKTENLFLDEPLDILIMYWTVTLKDGKIKFYNDVYKRDPVLIEA
LNRPTYEGVLADDGLLNTME
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atgatgcacttcaatcaattcaaatccgccttactccttatccttacgctagtcagcacc
aatgtttttgcctcgaatctcgaacttgaggcgctgctcgagcccctttccacaggggag
cgagtcaaagtcgacaacacccaaatcattagtgcaaagttgctgtcgcgggtctaccaa
gtacgccaatatcaaccactctggcaagacagagactacgctggcactatgctcgatgtg
attaaaagtgccgatgaggaaggtcttgcgaaggaagattaccattactccaagttgctc
gagcttcaccaacaactcagagcctcgagttggcaggatgaataccgcagcaatgtattt
gaagtgctgctaagcgatgggatcatcacctacgccattcatttactgaatggcaaagtg
aaccccagtatgctcggcaaaacttggaactatgatgaaacccatctggatttcgacacc
acattaaagcagctcgaagaacacattaaagcccataccgtggctgacgctattgcaggc
ttagcgcctaagattgcgccctatcaacagcttaaacagtatctagcccagtacaaagac
ttggcggcacgttatccttttagccccattccctatacggaagtaatcaaaccgggcagt
acttccccctcggtacaaggcattgccacacggctaacagagttaggttacttagctgca
agcgcgccagcggacaatagcgccgccgtgagccagcccttaacgtacgacagcacactt
gaagccgcggtgcgtcaattccaaaccgaccatagtcttaaagccgatggcgtgattggt
gcgggcacaatggcggcgctcaatgtgccctactcgcaacgggtcgaacagatccgtatt
aacctcgagcgtgcgcgctggttatcggcaaacttacgcgccaattaccttatcgtcaat
ttagcaggttacgagctgttactctttaaagacaacagcttaagctggcgaaccgacatt
atcatcggcaaaattaacgctaaaacaccgctgtttaaatccaagttaaaatacgtggtc
gttaatccgacttggactgtgccccgcagcatttccaccgagatcatcaatcacttacgt
aaagatcccgattatttacagaagaaacactttaaagtggtcgaaggctcgggcacgccc
gtggatgcaagcggcatcgattggcacagtatgacgcgcaagaacttcccctactggttt
gtgcaagaaccgggtgaggataactcccttggggtagtcaagtttatcttccctaaccaa
tactcgatttatctgcatgatacgccagctaaaagtctgtttgaacaaacggatagggcc
ttcagtcatggctgtattcgagtcaaagatccactcgtgctggcggataaattgctgagt
gccaatgccaattggtcaagtaacacgctcagtagcaaactgagtgagggaaaaacggag
aacctgttcttagatgaacccttagatattttgatcatgtattggaccgtcaccttaaag
gacgggaaaatcaagttttacaatgacgtatataaacgcgatccggtacttattgaggca
ttaaaccgcccaacctatgagggtgtgttagccgatgatggcttactcaataccatggaa
taa
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