Shewanella sp. MR-7: Shewmr7_3410
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Entry
Shewmr7_3410 CDS
T00389
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
shm
Shewanella sp. MR-7
Brite
KEGG Orthology (KO) [BR:
shm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
shm03016
]
Shewmr7_3410
Enzymes [BR:
shm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Shewmr7_3410
Transfer RNA biogenesis [BR:
shm03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Shewmr7_3410
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
NACHT
Motif
Other DBs
NCBI-ProteinID:
ABI44391
UniProt:
Q0HR64
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All DBs
Position
4044229..4044801
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AA seq
190 aa
AA seq
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MLQRLFLGFAPTSIQRQQLLQLQQSLAPHLAPHAKPVIQSNLHLTLAFLGLANPTQVALL
LDGVDKLAKPRFSVTLSSIAAWPKAQVCCLKGDSISPELALLASQAQDLAQQLQLHLSEH
PFRPHISLFRKAKPLGILVSELTLKELVQQNVIQASMLELTLAPEQLHLYLSASGGRGVE
YQILHSWPLA
NT seq
573 nt
NT seq
+upstream
nt +downstream
nt
gtgttacaacgactcttccttgggtttgcccctacaagcatacagcggcaacaactgctg
cagttgcagcaaagcttggcgccgcatttagcgccacatgctaaacccgtcatccaaagc
aatttacacttaaccctcgcgtttttaggactcgccaatccgactcaagtggcgctgttg
ctcgacggtgtcgataagctagctaaaccgagattcagtgtcaccctgagtagcatcgcc
gcgtggcctaaggcgcaggtctgttgtttaaagggcgatagcatcagtcctgagttagcc
ctcttagcatcacaggcacaggatttagcccaacagttacagttgcatctgagtgagcat
ccgtttcggccccatatcagcttgtttagaaaggcaaagccgttaggcatcttggtcagt
gagctaacgcttaaggagttggtacagcagaacgtcatccaagcttcgatgcttgaactc
acgctcgcacccgagcagctgcatttgtatctttccgccagtggcggacgcggtgtggaa
tatcaaatcttacattcttggccgctcgcataa
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