Shewanella sp. MR-7: Shewmr7_3558
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Entry
Shewmr7_3558 CDS
T00389
Name
(GenBank) ATP-dependent DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
shm
Shewanella sp. MR-7
Pathway
shm03420
Nucleotide excision repair
shm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
shm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Shewmr7_3558
03430 Mismatch repair
Shewmr7_3558
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shm03400
]
Shewmr7_3558
Enzymes [BR:
shm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Shewmr7_3558
DNA repair and recombination proteins [BR:
shm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Shewmr7_3558
MMR (mismatch excision repair)
Other MMR factors
Shewmr7_3558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
PcrA_UvrD_tudor
DEAD
ResIII
Motif
Other DBs
NCBI-ProteinID:
ABI44538
UniProt:
Q0HQR7
LinkDB
All DBs
Position
complement(4219402..4221570)
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AA seq
722 aa
AA seq
DB search
MDVSSLLDGLNDKQREAVAAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAV
TFTNKAAAEMRERVEKVAGTNMGRMWIGTFHGLAHRLLRTHFQDADLPQSFQILDSDDQV
RLLKRILKSLNLDEKQYPPRQAQAYINGKKDQGLRPKHIDAGGFPIEQNLLKIYQVYQES
CDRAGLVDFAEILLRAHELWLNKPHLLAHYQERFKHILVDEFQDTNAIQYAWIRVLAGQT
ANVMIVGDDDQSIYGWRGAQVENLHRFLRDFPTATTIRLEQNYRSKGNILKASNALIANN
PERLGKELWTDEADGEPISLYCAFNEMDEARFIVGRINDWYEKGGNLSDCAILYRSNAQS
RVLEEALLHKGLAYRIYGGLRFFERQEIKDAMGYMRLISNKNDDAAFERVVNTPPRGIGD
RTLDILRTTARQQELTLWQACLRLLDEKVLAGRAASAVRGFMDLIVTLQEETQDMALYRM
TDTVIQASGLKAMYEAEKGEKAHARIENLEELVTAARTFEMPEELEDMGELNAFLSHAAL
EAGEGQADAFTDAVQLMTLHSAKGLEFTMVFMAGVEEGIFPSKMALEEGDRLDEERRLCY
VGMTRAMEKLYITYAESRRIYGREDYARPSRFIKEIPPQYVDEIRLKAQVSTPMANNRFS
AQKSAVANDTGFSVGQRVHHPKFGDGKVTNFEGSGAQARVQVNFSDFGSKWLVVAYARLE
AR
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggacgtatcttctttacttgacggcctaaatgataaacagcgtgaggctgttgcggca
ccgcaatctagcatgttagtgcttgcgggcgcaggcagtggcaaaacgcgagtattaacc
caccgtatcgcgtggttaatgcaggttgaacagcagagtccttactcgattttagccgtg
acgtttaccaataaagccgcggccgagatgcgcgagcgggttgaaaaagtcgctggtacc
aatatggggcggatgtggattggtactttccacgggctggcgcatcgtttattacgcact
cacttccaagatgcggatttaccgcaaagcttccaaattctcgattcggacgatcaggtg
cgcttgctgaaacgcatccttaaaagtttgaatctggatgaaaaacaatatcctccccgt
caggcgcaggcctatatcaatggcaagaaagaccaaggtttgcggcccaagcatatcgat
gcgggtggttttccgattgagcaaaacctgctgaagatttatcaggtttatcaagagtct
tgcgaccgcgcgggtttagtcgactttgccgaaatcctgctgcgtgcccacgagctgtgg
ctcaataaaccgcatctgctggcgcattatcaggagcgttttaagcatattctggtggac
gagttccaggatactaacgccatccaatatgcgtggatccgcgtgctggcaggccaaacc
gctaacgtgatgatagtgggtgacgacgaccaatccatttacggttggcgcggcgctcag
gttgaaaacctgcaccgcttcctgcgggatttccccacggcgactacgattcgcctcgag
caaaattatcgctccaagggcaatattttgaaggcgtcgaacgcccttatcgccaataac
cccgagcgtttaggtaaagagttgtggaccgacgaagccgatggtgagccgatttccctc
tactgcgcctttaacgaaatggacgaggcgcgctttattgtcggtcgtatcaatgattgg
tacgaaaaaggcggcaatttaagtgactgcgcgattttatatcgctcaaacgctcagtcg
cgcgtgctcgaagaagccttattacacaaaggcttagcctatcgtatttacggtggcctg
cgcttcttcgaacgccaagagattaaagatgctatgggttatatgcgtcttatcagcaat
aaaaatgacgatgccgccttcgagcgcgtggtcaatacgccgccccgtggcattggcgat
cgcactctagatattttacgcactaccgcgcgtcagcaggaactcaccctgtggcaggct
tgtttacgtttgctggatgaaaaggtgctcgcaggccgagccgcctcggcggtacgtggc
tttatggatcttatagttaccctgcaggaagaaactcaggatatggcgctgtaccggatg
acggacacagtgatccaagcctctgggcttaaggccatgtacgaggcggagaaaggcgaa
aaggcccacgcccgtatcgaaaacttagaggaactcgttactgcggcgcgcaccttcgaa
atgccagaggagcttgaggatatgggcgagcttaacgccttcctatcccatgcggcccta
gaggcgggcgaaggtcaggccgatgcctttaccgatgccgtacagttgatgacactgcac
tcggccaaggggctggagtttaccatggtgtttatggcgggcgtcgaggaggggattttc
ccgagtaagatggcgctcgaagagggcgacagactcgatgaggaacgccgcctctgttac
gtgggcatgacccgcgcgatggaaaaactctatatcacctatgccgaatcccgccgtatt
tatggccgtgaagattatgcccgtccatcgcgttttattaaggaaattccgccgcaatat
gtggacgaaattcgcttaaaagcgcaggtgtcaacgccgatggccaataatcgcttcagc
gcgcaaaagtcggcggtcgccaacgatactggctttagcgtcggccaaagggtgcatcat
ccaaagtttggtgacggtaaagtgactaacttcgaaggcagtggcgcgcaggcgcgggta
caggtgaattttagtgattttggcagtaagtggctggtggtcgcctacgcgcgtttagag
gcgcgttga
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