Shewanella sp. MR-7: Shewmr7_3614
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Entry
Shewmr7_3614 CDS
T00389
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
shm
Shewanella sp. MR-7
Pathway
shm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
shm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Shewmr7_3614
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
shm03019
]
Shewmr7_3614
Enzymes [BR:
shm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Shewmr7_3614
Messenger RNA biogenesis [BR:
shm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Shewmr7_3614
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_22
CCDC138_C
Motif
Other DBs
NCBI-ProteinID:
ABI44594
UniProt:
Q0HQL1
LinkDB
All DBs
Position
complement(4294378..4295697)
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AA seq
439 aa
AA seq
DB search
MSQTHLSNQKFADLPLHPEVKQALAENGFEFCTPIQALSLPVLLQSKDIAGQAQTGTGKT
MAFLVATFNHLLSTPIPENRQLNQPRAIIMAPTRELAIQIAKDAILLAKHTHLKVGIVYG
GESYDVQRKVLDQGVDILIGTTGRIIDYVRQGIISLNAIQAVVLDEADRMFDLGFIKDIR
FLFRRMPNADQRLNMLFSATLSMKVQELAYDHMNDPVKVEIAPEEKTSKNIKEEIFYPSQ
EDKIRLLLTLIEEDWPEKAIVFSNTKHSCENLWSWLEGDGHRVGLLTGDVPQKKRIRILE
QFTQGQLDILVATDVAARGLHISDVSHVYNYDLPDDCEDYVHRIGRTGRAGNKGVSVSFA
CEEYALNLPAIESYINHSIPVSNYDRDALLDDIPPPVKIHRKHPAGARNLRERSGAGRPQ
GAHRSGGRPPRHDRTRRQP
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgagccaaacacatttatctaatcaaaaatttgccgaccttcctctacatccagaggta
aaacaggcccttgccgaaaacggcttcgaattttgtacgccaattcaggcgttatcatta
cccgtattacttcaatcaaaagatatcgccggccaagctcaaacgggcactggtaagaca
atggcgtttttggttgccacatttaaccatttattatcgacgccaattcctgaaaaccgt
cagcttaatcagccgcgcgccatcattatggccccaactcgcgagctggcgattcaaatt
gcaaaagacgcgattctacttgccaagcatactcacttaaaggtggggattgtttacggt
ggcgagagttatgatgttcagcgtaaagtactcgatcaaggtgttgatatcttaatcggg
acgactggacgtattattgactatgtgcgtcagggcattattagcttaaatgcgatccaa
gccgtagtgttagacgaagccgatcgcatgttcgacctcggttttatcaaggacattcgt
ttcctcttccgacgtatgcccaatgccgatcagcgtctgaacatgctgttctcggcgaca
ctttcgatgaaggtgcaggaacttgcctatgatcatatgaatgatcctgtgaaagtcgaa
attgccccagaagaaaaaacctccaagaacatcaaagaagaaattttctatccctctcaa
gaagataaaattcgtttactgctgacattgattgaagaagattggcccgagaaggccatt
gttttttcaaacactaagcacagctgtgagaacctatggtcttggcttgaaggggatgga
catcgcgttggtttgctgacgggtgatgtaccgcagaagaaacgtattcgtatcctggag
caatttactcaaggccaactagatattctggtcgcgaccgatgttgctgcacgtggacta
catatctccgatgtttctcatgtctacaattatgatttacctgatgattgtgaggactat
gttcatcgtatcggtcgtacgggccgtgcgggtaacaaaggcgtatctgttagtttcgcc
tgtgaagaatacgcactgaatctgcctgcgattgaaagctatatcaatcactccattcct
gtgagtaattatgaccgtgatgcgctgctggatgatattccaccgccggttaaaattcat
cgcaaacaccccgctggggcgcgcaatttacgtgagcgctctggagctggtcgacctcaa
ggtgcccatcgcagtggtggccgtccacctcgtcatgacaggacgcgtagacagccgtaa
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