Shewanella sp. MR-7: Shewmr7_3771
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Entry
Shewmr7_3771 CDS
T00389
Name
(GenBank) GAF modulated sigma54 specific transcriptional regulator, Fis family
KO
K21405
sigma-54 dependent transcriptional regulator, acetoin dehydrogenase operon transcriptional activator AcoR
Organism
shm
Shewanella sp. MR-7
Brite
KEGG Orthology (KO) [BR:
shm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
shm03000
]
Shewmr7_3771
Transcription factors [BR:
shm03000
]
Prokaryotic type
Helix-turn-helix
Other families
Shewmr7_3771
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
AAA_lid_14
HTH_8
HTH_30
AAA_5
AAA_2
Mg_chelatase
PAS_4
AAA_3
nSTAND6
HTH_7
HTH_1
HTH_50
HTH_22
AAA_7
MutS_III
HTH_29
Motif
Other DBs
NCBI-ProteinID:
ABI44750
UniProt:
Q0HQ55
LinkDB
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Position
complement(4480242..4482101)
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AA seq
619 aa
AA seq
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MTVKPHFPTTQAWLTDSWQRSLGAGLSEFRAGEDLRLTRAELKHKHEQYQQLIELVQSHA
LPLFNQLMAHSNSRLLLSDADGYVLKHWGVSRYSSKLADVALDIGVNWLEKYKGTNAIGT
ALTAKQAVSVVGEQHFIRQNRFMSCTACPIFSPQGEMLGVLDITSEQQRHSQQTLMLVSS
LAQQVETALLCHLPDSHYRIDFAAQPSLLNSGWQGIVIASSDGRIVGCNPMAKQLLSQAK
LGDSLDQHLGDNWARAGGFHRDSALHVQTQALALTQTKSSRTLQDKPLNQLGVRFRDPLL
ERAWQQANKVITKQIPLLVLGETGVGKEQFVKKLHAQSARRSQPLVAVNCAALPAELVES
ELFGYQAGAFTGANRTGFIGKIRQAHGGFLFLDEIGEMPLAAQSRLLRVLQEREVVPVGS
NQSFKVDIQIIAATHMDLESLVAQGLFRQDLFYRLNGLQVRLPALRERQDIERIIHKLHR
RHRSSAQTLCTELLAQLMRYDWPGNLRELDNLMQVACLMAEGEAVLEITHLPDYLAQKLM
NLAFEPQTLTEVVDAETTKHPHELSESSSATIDSLHGTINLNVLQAYRACEGNVSQCAKR
LGISRNALYRKLKQLGIKD
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgacagtaaaaccgcattttccaaccacacaggcatggttaaccgattcatggcagcgc
agcttaggtgctggcttatcagagtttcgtgctggtgaggatctcaggctcacgcgcgcg
gagctcaaacataaacatgagcaatatcagcagctcatcgaattagtgcaatcccatgcc
ttaccgctgtttaatcaactgatggcgcactccaatagtcgattattgctctccgatgcc
gacggttatgtgctgaaacattggggggtgagccgctattccagcaagctggcggatgtg
gcgctcgatattggggtcaactggctcgaaaagtataagggcaccaatgcaataggcacg
gcgctcacggccaagcaggcggtatcagtggtcggtgagcagcattttatccgccaaaac
cgttttatgagttgcaccgcttgcccgattttttcgcctcaaggcgagatgctcggagtg
ctcgatattaccagtgagcagcaacggcattcgcagcaaaccttgatgctagtgtcgagc
ctagcgcagcaggtcgaaacggcgctgctgtgtcatctgcccgatagtcattatcgaatc
gatttcgcggcgcagccgagtctattaaattccggttggcaaggcatagttatcgccagc
agtgacgggcgaattgtgggctgtaatcccatggcgaaacagctgctgagtcaggccaag
ttgggtgacagtttagatcaacacctcggcgacaattgggcacgagcggggggctttcac
cgcgattcggcgctgcatgtgcagacgcaagcgctggcactgacacagacgaaaagttcc
agaacccttcaagataaacccttgaaccaattaggggtcaggtttcgcgatccgctattg
gagcgggcctggcagcaggcgaacaaggtgattactaagcagatccccctactggtacta
ggcgaaacgggtgtcggcaaggagcaatttgtgaaaaagctccacgcccagagtgcccgc
cgctcgcagcccttggtggcggtgaactgcgccgccttgcctgcggagttggttgagtca
gagttatttggttatcaggcgggggcttttaccggtgccaatcgaactggttttatcggt
aagatccgccaagcccacggtggctttttattcctcgatgaaattggtgagatgccgctg
gcggcgcagagccgtttactccgggtgttgcaggagcgcgaggtcgttcccgtcggcagt
aatcaaagttttaaggtcgatattcagatcatcgccgcgacccatatggatttagagtcg
ctggtggcgcagggattgttccgtcaggacttgttttatcgcctaaatggattgcaagtg
cggcttcctgcactgcgtgaacggcaggatattgagcgcatcatccataaattgcaccgc
cgtcaccgcagtagcgcgcaaaccttgtgtactgagttgttggcgcagctaatgcgttac
gattggcccggtaacctaagggagttggataacttaatgcaggtggcgtgtttgatggcc
gaaggtgaggctgtactcgagataactcatctccccgattacctggctcaaaagctcatg
aatctggcgtttgagccccaaactttaactgaagtcgtcgacgctgaaaccacgaagcat
ccgcacgaactgtccgagtctagctccgccaccatagactcgctccacggaaccataaat
ctgaacgtgttacaggcttaccgcgcctgcgagggcaatgtgagccaatgtgctaagcgt
ttggggattagccgtaatgccttgtatcgcaagttaaaacagctagggattaaggactaa
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