Shewanella sp. MR-7: Shewmr7_3974
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Entry
Shewmr7_3974 CDS
T00389
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase / Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
shm
Shewanella sp. MR-7
Pathway
shm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
shm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Shewmr7_3974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shm03400
]
Shewmr7_3974
Enzymes [BR:
shm01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Shewmr7_3974
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Shewmr7_3974
DNA repair and recombination proteins [BR:
shm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Shewmr7_3974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
DUF1631
DUF735
Motif
Other DBs
NCBI-ProteinID:
ABI44951
UniProt:
Q0HPK4
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All DBs
Position
4718263..4719078
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AA seq
271 aa
AA seq
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MPELPEVEVTRQGIAPHLVEQTVVDLIVRNASLRWPVPELAKQIIGQTIRQVRRRAKYLL
IDTDAGTSIVHLGMSGSLRILPHDTPVEKHDHIDLVLANGRILRFNDPRRFGAWLWCQLP
EEAHPLLEKLGPEPLTDAFNVNQLAAALAGKKKAIKLCLMDNHIVVGVGNIYANEALFAA
GIHPEAEAGKIDIERLTVLVAEVKQILAHAIKQGGTTLKDFTNAEGKPGYFAQKLHVYGR
GGETCTQCGNLLSEIRLGQRTTVFCGICQTR
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattaccagaagtcgaagtcacccgtcagggcattgccccacatcttgtcgaa
caaaccgtggttgacctcattgtccgtaatgcctcattgcgttggcccgttcccgaactt
gccaaacagatcatcggccaaaccatacgccaagtacgccgccgcgcaaaatacctgtta
atcgataccgatgccggcaccagcatagtgcatttagggatgtcgggcagcttgcggatc
ctcccccatgacacgccagtggagaagcacgaccatatcgatctcgtcctcgccaacggc
cgtattctgcgctttaacgatccgaggcgtttcggtgcttggttatggtgccaactgccg
gaggaagcccatccgctactggaaaaactcgggccagaacctttaaccgatgcctttaac
gtcaatcagttagctgccgcactggcgggcaagaagaaggccatcaaactctgcctgatg
gataaccatattgtggtgggtgtgggaaatatttacgccaacgaagcactgtttgccgca
gggatacatcccgaggcagaagcaggcaagatagatattgaacgcttaacggtactggtt
gccgaggtcaaacaaatcctcgcccacgccataaagcagggcggcactacgcttaaggac
ttcaccaatgccgagggtaaacctggctatttcgcacaaaaactgcatgtttacggccgc
ggcggcgaaacttgcactcagtgcggcaatctactcagcgaaatccgcctgggtcaacgc
accacagtattttgcggcatctgccagacgcgttaa
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