Shewanella sp. ANA-3: Shewana3_0193
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Entry
Shewana3_0193 CDS
T00428
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
shn
Shewanella sp. ANA-3
Pathway
shn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
shn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Shewana3_0193
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shn03021
]
Shewana3_0193
03400 DNA repair and recombination proteins [BR:
shn03400
]
Shewana3_0193
Enzymes [BR:
shn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Shewana3_0193
Transcription machinery [BR:
shn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Shewana3_0193
DNA repair and recombination proteins [BR:
shn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Shewana3_0193
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
ABK46437
UniProt:
A0KRL8
LinkDB
All DBs
Position
1:234206..238423
Genome browser
AA seq
1405 aa
AA seq
DB search
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEENYLDALEEYGDEFEAKM
GAEAVLELLRAIDLEKEIEQMREELPSINSETRRKKVTKRLKLMEAFHTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMYFMSVAEVEKAYATG
AAELHARVKVRITETVIGDNGERTEQRRIVDTTVGRALLSQILPAGLSFDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFRYATISGASVGIDDMVIPAEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVEEKQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERVL
GRVVAVDVLYPGTEDVLAPRNTLLDEAWCDKLEEHSIDEVIVRSVITCDTDFGVCAACYG
RDLARGHLINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNSGSLKL
HNAKYVTNTDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLEKLEEAAVEAGDIIANW
DPHTHPIITEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVILDVGQRGSAGKEMRPMIRL
VGADGSDLMIPGTEVPAQYFLPGSAIVNLDDNAQIAVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGEQYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCVITSAGDSEFLEGEQVEVSRVKIANRDLIEQGKVPATFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGYAYHKTRNDARAKKDEPV
VVNKITASEAEQNLADLLNLAGSQD
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaacagcaaagcaagactgaagaatttaacggcatc
aaaattggtctggcatcgcctgatctgatccgttcttggtcttttggtgaagttaagaag
ccagaaaccattaactaccgtaccttcaagcctgagcgtgaaggtctgttctgtgcgcgt
atctttggcccggtcaaagattacgaatgtttgtgcggtaagtacaagcgtttgaagcac
cgtggtgtgatctgtgaaaagtgtggagtagaagttacccagactaaagtacgtcgtgag
cgtatgggtcacattgaactggctagcccagttgcccacatttggttcttgaaatcactg
ccgtcccgcatcggtttaatgctggacatgacgctgcgtgatatcgaacgcgtactgtat
tttgaatctttcgtcgtgatcgagcctggcatgaccagccttgaacgtggccaaatgctg
acagaagaaaactatctggacgcattagaagaatacggtgacgaattcgaagctaagatg
ggtgctgaagcggtattagaactgctgcgcgcaatcgatctcgaaaaagaaatcgaacaa
atgcgtgaagagctgccatcaatcaactctgagactcgtcgcaagaaagtgactaaacgt
cttaagttgatggaagcgttccacacttctggcaacaagccagagtggatgatcttaaaa
gtactgcctgtgttaccacctgacttacgtccgctggtaccgctcgatggcggccgcttc
gcgacttcagatctgaacgatctgtatcgccgcgtgatcaaccgtaacaaccgtttgaag
cgtctgttagatttagctgcgccggacatcatcgtacgcaacgaaaagcgtatgttacaa
gagtccgttgatgcgctattagataacggtcgtcgtggtcgtgctattactggttctaac
aaacgtcctctgaaatctttggccgacatgatcaaaggtaaacaaggtcgtttccgtcag
aacttgttaggtaagcgtgttgactactcaggtcgttcggtaattaccgtaggtcctact
ttacgtctgcaccaatgtggtcttcctaagaagatggcactggaactgttcaagccattc
atctatggcaagctggaaggtcgtggcttagcgacaaccatcaaagcggctaagaagatg
gtagagcgtgaagtggcggaagtttgggacgttctagatgaagtgatccgcgaacatcca
gtgatgcttaaccgtgcaccaacactgcacagactgggtatccaagcgttcgaacctgta
ctgattgaaggtaaagcgatccagttacacccactcgtttgtgcggcatataacgccgac
ttcgacggtgaccaaatggcggtacacgtaccgttaacactggaagcgcagcttgaagct
cgtgccttgatgatgtctaccaacaacatcctgtcaccagcaaacggcgagcctgttatc
actccgtctcaagacgtggtattaggtctgtactacaccagccgtgagcgtatcaacggc
cgtggtgaaggtatgtactttatgtctgttgctgaagttgaaaaagcttacgcaactggc
gctgctgaactgcatgcccgcgtgaaagtgcgtatcactgaaaccgttatcggtgacaat
ggtgagcgtactgagcaacgtcgtatcgtagatacaactgtgggtcgtgctctgctgtca
caaattctgccagcaggtttgtcatttgatctggttaaccagaacatgggcaaaaagcag
atttctaaactattgaacacttgttaccgtcaattaggtctgaaagatactgttatcttc
gctgaccaactgatgtacacaggtttccgttacgccactatctctggtgcatctgtcggt
attgacgacatggtgatcccagctgagaagtacaccttagttgctgacgctgaagcagaa
gtgctcgagattcaagagcagttccaatcaggtctggtaaccgcgggtgagcgttacaac
aaagtcatcgacatctgggcaagtgcgaacgaaaaagtttctaaagcgatgatggaaaac
ctgtcaactgagacagtgattaaccgtgatggcgttgaagagaaacaagcatcgttcaac
agcatttacatgatggccgactcgggcgctcgtggtagtgccgcacagatccgtcagtta
gcgggtatgcgtggtctgatggcgaaaccagacggttcgatcatcgaaaccccaatcgtg
gcgaacttccgtgaaggtctgaacgtacttcagtacttcatctcaacccacggtgcgcgt
aaaggtcttgccgataccgcattgaagacagcgaactcgggttacctgactcgtcgtctg
gttgatgttgctcaagacttagtggtcatcgaagacgattgtggtactcacgaaggtctg
acaatgaagccgctgatcgaaggtggtgacgttgttgagccattacgtgaacgcgtactg
ggtcgtgtggttgcggttgatgttctgtaccctggtactgaagatgtgcttgcgccacgt
aacactctgctcgatgaagcatggtgtgacaagttagaagaacactcaatcgacgaagtg
attgtacgttcagtcattacctgtgataccgacttcggtgtgtgtgcggcatgttatggc
cgtgacttagcccgtggtcacctgattaaccacggcgaagccatcggtgttgtcgcggcg
caatcaatcggtgaaccaggtacacagttaacgatgcgtacgttccacatcggtggtgcg
gcatcaagagcgtctgcagaaaacaacgttcaagtgaagaactctggttcgttgaaactg
cacaatgctaagtacgtaactaacactgacggcaagctggttatcgtttctcgttcttct
gaactggcgatcatcgacgaactaggtcgtgagaaagagcgttataaagtgccttacggt
actgtgctcgagaagttagaagaagctgcggtagaagcgggcgatatcatcgctaactgg
gatccacatactcacccaatcatcaccgaagtggcgggtagtattaagttcgttgacatg
atcgacggcgtgaccatgactcgtcaaacagacgaactgactggtctgtcttcaatcgtg
atcctcgacgtgggtcaacgtggttcagcgggtaaagaaatgcgcccaatgatccgtctg
gttggtgccgacggtagcgacctgatgatcccaggtactgaagtacctgcacaatacttc
ttaccaggcagtgcgatcgttaacctcgacgacaacgcgcaaatcgccgtgggtgacgcg
ttagcacgtattccacaagaatcgtctaaaacacgcgacatcacgggtggtctaccacgc
gttgctgacctgttcgaagctcgtaagccaaaagagccagctattctggcggaaatctct
ggtaccatctcgtttggtaaagagaccaaaggcaagcgtcgtctggtgattacaccagcg
gatggcggtgaacagtacgaagagatgatcccgaaatggcgtaacttaaacgtgttcgaa
ggtgaaaaagtcgaacgtggtgaagttattgcagatggtccagaagcggcgcacgacatt
ctgcgtctacgtggcatccacaacgtagcaaactacattgtgaacgaagtacaagacgta
taccgtctacaaggcgtgaagatcaacgataagcatatcgaagtgatcatccgtcaaatg
ctgcgtaagtgcgtgatcacctctgcgggtgacagtgagttcttagaaggcgaacaagtt
gaagtgtctcgcgtgaagatcgctaaccgcgacctgatcgaacaaggcaaagtgcctgcg
accttcgaacgtgaactgctgggtattaccaaagcgtctctggcaacagaatcgtttatc
tctgcagcatcgttccaagaaaccactcgcgtactgacagaagctgccgtaggtggtaag
tctgataacttacgtggtctgaaagaaaacgtaatcgttggccgtctgatcccagccggt
actggttatgcttatcacaagactcgtaacgatgcccgtgctaagaaagacgagccagtt
gtagtgaataagatcactgcaagtgaagcagaacaaaaccttgcagacctcttaaacctg
gccggtagccaagattaa
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integrated database retrieval system
