KEGG   Shewanella sp. ANA-3: Shewana3_0408
Entry
Shewana3_0408     CDS       T00428                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
shn  Shewanella sp. ANA-3
Pathway
shn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:shn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Shewana3_0408
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:shn03021]
    Shewana3_0408
   03019 Messenger RNA biogenesis [BR:shn03019]
    Shewana3_0408
Transcription machinery [BR:shn03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Shewana3_0408
Messenger RNA biogenesis [BR:shn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Shewana3_0408
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 NACHT AAA AAA_25 Spore_III_AA S1CSD-TOTE-2
Other DBs
NCBI-ProteinID: ABK46651
LinkDB
Position
1:complement(467291..468556)
AA seq 421 aa
MNLTELKDTPISDLVSLAENMKLENMARARKQDIIFSILKAHAKSGEDIFGGGVLEILQD
GFGFLRSADGSYLAGPDDIYVSPSQIRRFNMRTGDTIFGKIRPPKEGERYFALLKVNEVN
FDKPENSRNKILFENLTPLHAEERMRMERGNGSTEDITARILDLCSPIGKGQRGLIVAPP
KAGKTLLLQNIAQSITYNNPEVVLMVLLIDERPEEVTEMQRLVQGEVIASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHRPKRF
FGAARNIENGGSLTIIATALVDTGSKMDEVIYEEFKGTGNQELHLSRKAAEKRVFPAIDF
NRSGTRREEKLTTPDELQKMWILRKILNPMDEVSAMEFLIDKLAMTKTNEEFFTAMKRAK
S
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaacttaactgaattaaaagacacgccgatatccgacctagtctcgctagccgaaaat
atgaaactcgaaaatatggcccgcgctcgcaagcaggacattattttctctattcttaaa
gcccacgccaaaagcggcgaagacattttcggtggcggtgtattagagatactccaagac
ggattcggtttcttacgtagtgcagatggatcttatttagctggcccggatgatatttat
gtatcaccaagccaaattcgccgctttaacatgcgaacgggcgacacgatttttggcaag
attcgcccaccaaaagaaggtgaacgttattttgccctgctaaaagttaacgaagttaac
ttcgataaacctgaaaactctcgcaacaaaatcctctttgaaaacttaaccccactccac
gcagaagaacgtatgcgcatggagcgtggtaatggctctactgaagacatcactgcccgt
attctggatttatgctcacctatcggtaagggtcaacgtggtctgatcgtcgcaccacca
aaagcgggtaaaaccttattactgcaaaacattgctcagtcaatcacctacaacaaccca
gaagttgtgttgatggtactgctgatcgatgaacgtcctgaagaagtgaccgagatgcaa
cgcctagttcaaggtgaagtgattgcatcgaccttcgacgaaccagctagccgtcacgta
caagtggctgaaatggtaattgaaaaagccaaacgtttagttgagcacaagaaagacgtt
gtgatcttactcgactctatcactcgtttggctcgcgcctacaacactgttatcccatca
tcgggcaaagtgttaactggtggtgtggatgcaaacgccctgcaccgtcctaagcgcttc
ttcggcgcggctcgtaacatcgaaaacggcggcagcttaacgattattgctaccgcactg
gttgataccggctcgaaaatggacgaagtgatctacgaagagttcaaaggtacaggtaac
caagaactgcatctgtcacgcaaggccgctgaaaaacgcgtattcccagcgattgacttc
aaccgcagtggtactcgtcgcgaagaaaaactgaccacacctgatgaactgcaaaagatg
tggatcctgcgtaagatcttaaatcctatggatgaagtcagcgcaatggaattcctgatc
gataaactggctatgactaagaccaacgaagaattcttcaccgcgatgaaacgcgctaag
tcttaa

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