Shewanella sp. ANA-3: Shewana3_1359
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Entry
Shewana3_1359 CDS
T00428
Name
(GenBank) RNA polymerase, sigma 28 subunit
KO
K02405
RNA polymerase sigma factor FliA
Organism
shn
Shewanella sp. ANA-3
Pathway
shn02020
Two-component system
shn02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
shn00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Shewana3_1359
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Shewana3_1359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
shn03021
]
Shewana3_1359
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
shn02035
]
Shewana3_1359
Transcription machinery [BR:
shn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Shewana3_1359
Bacterial motility proteins [BR:
shn02035
]
Flagellar system
Flagellar assembly proteins
Stator
Shewana3_1359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
UPF0122
HTH_23
HTH_10
Ketoacyl-synt_2
Motif
Other DBs
NCBI-ProteinID:
ABK47593
LinkDB
All DBs
Position
1:1572224..1572937
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AA seq
237 aa
AA seq
DB search
MNKAAAYTCLDSKTSIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASSKFD
GGKGAKFETFAGIRIRGAMLDEIRRGDWVPRSVHRNNRRVAQAIDELEQVLGRDARDTEI
AEKLDMTLDEYHHILNDVSVGKIIGIEDLGVSQDILTSSDNVSDGTYEALAETQFHSALV
EAIKLLPERDALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKGKLKHWT
NT seq
714 nt
NT seq
+upstream
nt +downstream
nt
gtgaataaagccgcagcgtatacttgtttagacagtaaaacgtcaatcgttgaacagtat
gcaccgttggttaaaagaattgcacatcacttgctcgccagattacctgcctcagtgcag
ctcgatgacttgcttcaagcggggatgatggggttattagaagcatcatccaagtttgat
ggtggcaaaggtgcaaagtttgaaaccttcgccggcatacggatccgtggcgccatgttg
gatgagatccgtcgtggcgactgggttccccgttctgttcatcgaaataatcgtcgagta
gctcaagccattgatgagttagagcaagtgttgggtcgtgatgcacgcgacacagaaatt
gcagaaaaacttgatatgacgctcgatgagtaccatcatattcttaacgatgtttctgtt
ggtaaaatcatagggatagaagacttaggcgtatcgcaggatatactcacttcgagcgat
aatgtcagtgatggtacatatgaagcgttagcagaaacccagtttcattcagcactagtt
gaggcgataaaattattgcccgaaagagatgcgctagtgctatcgttatactacgatgaa
gcattgaatttaaaagaaattggcgccattcttgaggtaagtgaatcgcgagttagccag
atattaagtcaggcaatgttgcggctcaaaggcaaactcaagcattggacataa
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