Shewanella sp. ANA-3: Shewana3_2246
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Entry
Shewana3_2246 CDS
T00428
Name
(GenBank) exodeoxyribonuclease V, beta subunit
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
shn
Shewanella sp. ANA-3
Pathway
shn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Shewana3_2246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shn03400
]
Shewana3_2246
Enzymes [BR:
shn01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Shewana3_2246
DNA repair and recombination proteins [BR:
shn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Shewana3_2246
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ABK48475
UniProt:
A0KXF6
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All DBs
Position
2703964..2707755
Genome browser
AA seq
1263 aa
AA seq
DB search
MTKVSPALPLDSLTLPFGGSRLIEASAGTGKTYTISGLYLRLLLGDGLSEPLNCEQILVV
TFTNAATEELRDRIRRRIQVAFKCFLGLEINDPFVQALYDKTPEAERAIALRRFDLALKS
LDEAAIFTIHGFCQRILADLAFESSLLFESDFTLDDSEFLHHAVRDFWREACYPLPEYLA
QIIASEFGDPDGLVKQLRALLGASEAKPLKPVQPFARLAESLSQSVQRFKLAWPRGRDAL
LELLHSLPLNGQRFGKASDNYPKLAEMFDQLDNFLAFGHGLPPLKVLEALSLSELKLNKG
GVLPSASEAPLLDHMEQLAALINAIKPAFLYSAKQGISERFAKQKQQKNVLTPDDLLTTL
AAAMQANPDTLPKAVASRFPVALIDEFQDTDPLQFAIFSGIYQTRLGLDTQNSAAEPKPR
TDSKLSLLMIGDPKQAIYAFRGADIYTYIEARRQTQAHYFLDTNYRSSRNLVAGVNHLFA
QHSDPFISQSIPFDPVKTPASAAAKQLVEQAPNSAALRLKLLSEGETGLNKASARQTLAE
DTAAEITRLLTQAANGQCRTPKGPLIAKDIAILVRDRNEAAVMKTALSKRQIGAVFLSRD
SVFETVEAREMALILRALASPKDERALRSALATALLGYRAEQIHAFNQDEEQRQRLLEQF
FELHQIWQKRGIMPALLSLANATQMVARLLHSPASTSTDQAEQDAAAQLEASNGERRLTD
FRHLAELLQQKATEIDGISALLNWYEQQLIDNTGTDEQQLRLESEQNLVQIVTIHKSKGL
EYPVCFVPFVSLARDNRRRPTPMLYHRTNADGAQELVWDLEGTDEGWEQAKQETLAEDLR
LLYVALTRPVYLCYLYIANHSRMLKTGLKSQLHETAIGYLLGITDTDCDFSRLQNAAKAL
VAGLESSQPAISIEVVADDIEANKLQTGGANTHTLSARKVSRQYRTPWRVGSYSGLVKNA
PHAKATPGADDEVNAVLGTDTTNSAIDPIWPDHWWQEAADLQAQPLLNRFSFERGANAGS
FMHLVLELIDFTQAQIDLPRELPKAMLQYGIAPEWQPVLEDWYLEVLQAPLALMAQDNQL
INPELCLAALAPQHTLVEMEFYLPLNRLKDTELNQLLGQYGYDTELQFDELQGMLKGFID
LTFEYQGKFYIADYKSNHLGDNIQAYHHSALKQAIGDHRYDLQYILYSLALHRYLAMRLP
NYDYDTHIGGCYYLFLRGMSVQYPGFGIYYDKPPKALILALDALFQRSLETSTVNQQDTG
AMA
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atgactaaggtatcacccgctttgccgttagattcgctcaccctgccatttggtggcagt
cgcttaatcgaggccagtgcgggcacggggaaaacctacaccatttcaggtctgtatctc
agattactgcttggggatggcttaagcgaaccgctcaattgtgaacaaattctggtcgtg
acctttaccaatgccgccactgaggaactgagggacaggattcgccgccgcattcaggtt
gcctttaagtgtttcttaggattagagattaacgatccttttgtgcaggcgctgtacgat
aagacccctgaagccgagcgcgctatcgccctgagacgcttcgatttggcgctcaaatcc
ctcgacgaagcggcaatttttacgattcatggattttgtcaacgaattttggccgatctc
gccttcgaatcatcattgttgttcgagtcggatttcaccttagacgacagcgagttttta
caccatgcggtgcgggacttttggcgcgaggcctgctatccgctacctgagtatttagcc
caaatcattgccagcgaatttggcgatcccgacggattagtcaagcagttgagagccttg
ctcggtgccagtgaggccaaaccgcttaaacctgtgcagccctttgctcgtttggcagag
tccttaagccagagtgtgcagcgctttaaactcgcctggccgcgtggccgcgacgcgctg
ttagagttactgcatagcctgccgcttaacggtcaacgttttggtaaggcgagcgacaat
taccctaaactggcggaaatgttcgaccagctggataactttttagcctttggtcatggc
ttaccgccgcttaaagtgctcgaagcgctgtcgttatccgagcttaagctgaataagggc
ggcgtgctcccaagtgcgagcgaggcgccactgcttgaccatatggagcagttagccgca
ttgattaacgcgattaaacccgcatttctttatagcgccaaacaagggatcagcgagcgt
tttgccaagcaaaaacagcaaaaaaatgtgctgacaccagatgatctgctcaccaccttg
gcagcggcgatgcaggccaatcccgacactttgccaaaggcggtggcgagtcgcttcccc
gtggccttaatcgatgagttccaagatacggatcctctgcaatttgctattttctcaggg
atttatcaaacccgtttggggcttgatactcaaaattcggcggctgaacctaagcctcgc
acggatagcaaattaagcctgctgatgattggtgacccaaaacaggcgatttatgctttc
cgcggcgccgatatttacacttatatcgaggcgcgcagacaaacccaggcgcactatttt
ctcgatactaactatcgctcgagccgcaatctggtggccggagtaaatcatttatttgcc
cagcattcagatccttttattagccaatcgattcccttcgatccagtcaaaacgcctgcc
agtgcggcggccaaacaactcgtcgagcaagcgcccaatagtgccgcgctgcggttaaaa
ctcttgagtgaaggcgaaacggggcttaataaagccagtgctagacaaaccttggctgaa
gacaccgccgccgaaatcacccgtttactgacgcaggccgccaatggtcaatgccgcacg
cccaaagggccattaattgctaaagatatcgccatcttagtgcgcgatagaaacgaagcg
gccgtgatgaaaaccgcgctgagcaagcgccagattggcgccgtctttttaagtcgcgac
agcgtatttgaaacagtcgaagcgcgggaaatggcgctcattctgcgcgccttggccagt
cccaaggacgagcgcgccctgcgtagcgcccttgcaaccgccctgcttggttatcgcgcc
gagcaaatccatgcctttaaccaagatgaagagcagcgccaaagactgctggagcagttt
tttgagctgcaccagatctggcaaaaacgcggcattatgccggcgctgctcagcctagcc
aatgcgacccagatggttgcgcgtctgctgcattcccccgcttcgacaagcactgaccaa
gcggagcaagatgcagccgctcagcttgaggcgagcaatggtgaacgtcgactcacggat
tttcgccacttagccgagctgttgcagcaaaaggcgaccgaaattgatgggatcagtgcc
ctgctcaactggtatgagcaacaactgattgataacacaggaactgatgaacagcagctg
cgccttgaaagcgagcaaaacttagtgcaaatcgtcaccatccataagagtaaggggctg
gaatacccagtatgctttgtgccctttgtcagccttgcgcgggacaatcgccgccgcccg
acgcccatgctctaccacagaaccaatgccgatggcgcgcaggagctggtgtgggattta
gaaggcacggacgaaggttgggaacaggcaaagcaggaaaccttagccgaagatctgcgt
ctgctctatgtggcgctcacccgccccgtgtacctgtgttatttgtacatagccaaccat
agccgcatgttaaagacggggcttaaaagccagctgcatgagaccgccatcggttatcta
cttgggatcactgacacggattgtgatttttcgcgtctgcaaaatgccgccaaggcgctg
gtcgcgggtctcgagtcgagtcaacctgcgatcagcattgaggtggtggccgacgacatt
gaggctaataaactgcaaacaggtggagcgaatactcataccttgagtgcccgtaaggtc
agccgtcagtatcgcactccatggcgcgtcggcagttattccggtttagttaaaaatgca
ccacacgctaaagccactcctggcgccgatgatgaggtcaatgccgtattgggcactgat
accacaaatagcgcaattgatcccatatggccagaccactggtggcaagaagctgccgat
ctgcaagcacaacctctgctcaatcgctttagttttgagcgcggcgccaacgcgggtagc
tttatgcacttagtgcttgagttaattgattttacccaagctcaaatcgacttaccccga
gagctacctaaggccatgttgcaatacggcattgcccccgaatggcagcccgtattagag
gattggtatcttgaggtattgcaagcaccactggcattaatggcgcaggataatcagctt
atcaatcccgagctgtgtttagccgcactcgcgccgcagcacaccttagttgagatggag
ttttacctacctctgaatcgcttaaaggatacggagcttaatcaactccttgggcaatat
ggctacgataccgagctgcagtttgacgaattacagggtatgcttaagggctttatcgac
ttaacctttgaatatcaaggcaagttttatattgccgactataagtcgaaccatctgggg
gataatattcaagcctatcatcatagcgccctgaaacaggcgattggcgatcataggtat
gatttgcaatatattctctactcccttgcgctgcaccgctatttagcgatgcgcttgccc
aattatgattacgatacccatatcggcggctgttattatttgtttttacggggaatgtcg
gtgcaatatccaggctttggtatttattacgataaaccgcccaaggcgctgattttggca
ttagatgcgctgtttcagcgcagcctagagacaagcactgtgaatcaacaggatacggga
gcaatggcatga
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