Shewanella sp. ANA-3: Shewana3_2611
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Entry
Shewana3_2611 CDS
T00428
Name
(GenBank) exonuclease SbcC, putative
KO
K03546
DNA repair protein SbcC/Rad50
Organism
shn
Shewanella sp. ANA-3
Brite
KEGG Orthology (KO) [BR:
shn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
shn03400
]
Shewana3_2611
DNA repair and recombination proteins [BR:
shn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Shewana3_2611
Archaeal homologous recombinant proteins
Shewana3_2611
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
DUF6306
GTP_EFTU
cobW
ABC_tran
Motif
Other DBs
NCBI-ProteinID:
ABK48838
UniProt:
A0KYG9
LinkDB
All DBs
Position
1:complement(3115569..3118625)
Genome browser
AA seq
1018 aa
AA seq
DB search
MKPLTLSMSAFGPFASTQTIDFTELGDNPLFLINGPTGAGKTTLLDGICFALYGKTTGNE
REGSQMRCDMADDNLLTEVTFSFQLGSTSYRIRRVPEQERLKKSGDGSTVQKSEAQLYKI
APDGSETLIVASKVSDATAEIEALTGLDVEQFRQVMVLPQGKFRELLMADSKAREQIFSQ
LFQTHIYKRIEDTLKAKAADIRNLVKEQRARRDGILQTAALTSDDELAAEFSRIEPEFAA
ATAAKEQSVAAHLAALKQRDSAQQLFAEFTRLQELQAEALSLNEQQAQIATQTARLDVAK
QAIRVKPLLDNVLSREQEASLAAAQRDSVQSTHDAAKIALAQAETAAQEIIPLEHKLRDL
EQQHSHLSALVPQLAEFASLEQALAQAKEILQHTKLQGQESKNALAALVEQRSHCENQQP
ALQQQSEQQLATAQALQQYRHMLEQFKQWQQICAKVAHTQGILEQVGSQGKALNTQYQGA
STAYKSLQLTWFQGQAAILARELKPHEPCPVCGSSAHPQPAVSHEELPTDLQLQAAQDAE
ALALDNLNKARTEYRGLQKQLEAQQQQANELATALGDKVELSLESHRQTLDELTLQAKQA
DAAAQALQQLQEQIKTLQQQESTLTQQLELERERYREQEGKVERLSGQFAEKALRIPEEY
RTLEVLNQAIADNQQQLEQIKRQIDALRAAQQQAAQQSVAAQTALSAAIEHCNGAADLQV
QAQQALLAALDNAGFTDRDALREALLTDEQMQALAEGIETYHRQCSLNQSQLTQLKTKLS
ESTSPDLDALEALLTERLAQLKTAEEVWSQLNTRLTLLNNTQTQLAIVDQKAKSLEDEYA
VIGTLADVANGNTGNKISLQRFVLSVLLDDVLLAATQRLHLMSKGRYRLLRKEDRAKGNK
ASGLELEVEDAYTSKVRPVATLSGGESFMAALSMALGLSDVVQAYAGGIKLDTLFIDEGF
GSLDQDSLELAIRTLMDLQSAGRMIGVISHVSEMKEQIGTRIDILKTSHGSEIKVILP
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgaagccactcacgctgtcaatgtcggcctttggcccctttgcctcgactcaaaccatt
gattttaccgaactgggggataaccccttattcctgatcaacgggccaactggtgcgggc
aagactacattgctcgacggaatttgttttgcgctctacggcaaaaccactggtaacgag
cgcgaaggcagtcagatgcgctgcgatatggccgatgataacttgcttaccgaggtgact
tttagttttcaattaggcagtacgagttatcgtattcgccgcgtccccgagcaggaaaga
ttaaagaaaagcggtgatggctcaacggtacaaaagagtgaggcgcagctgtataagatt
gccccagatggcagtgaaacccttatcgtcgccagtaaagtgtcagacgccacggccgaa
atcgaggcattaaccggcttagatgtggagcagttccgtcaagtaatggtgctcccgcag
gggaaatttcgcgaattgctgatggccgactctaaggcgcgtgagcaaatttttagccag
ctatttcaaactcatatttataaacgcatcgaagataccctaaaagccaaggcggcggat
attcgcaaccttgtcaaagaacagcgcgcccgccgcgacggtattttgcaaaccgcagca
ttaacatccgatgacgaacttgccgcagagtttagccgcattgaacccgaattcgcggcg
gcgacggcggcaaaggagcagagcgttgcggcgcatttagcggcattaaaacagcgtgat
agcgcgcagcaactctttgctgaatttactcgcttacaggaattgcaggctgaggcgctt
agccttaatgagcagcaagcgcagattgcaacccaaacggcgcggcttgacgtcgccaag
caagcaatacgggtaaaacccttattagataatgtcttgtcgcgggagcaagaagcgagt
ctcgccgccgctcagcgcgatagtgtgcagtcgacacacgatgccgctaagatcgcactc
gcacaagctgaaacagcggcccaggaaatcattcccctcgaacataagctgcgcgacctt
gagcagcaacacagtcatctcagtgccttagtgccacagctggcagagtttgccagcctt
gaacaagctttagcgcaggctaaagagatactgcaacacaccaagttgcaggggcaggag
agtaaaaatgcgcttgcagctttagttgagcagcgcagccattgtgagaatcaacagcca
gccttgcaacagcaaagtgagcagcaacttgccactgcgcaggcgctgcagcagtaccgt
catatgctcgagcagttcaagcagtggcaacaaatatgtgccaaagtcgcgcacactcaa
gggattcttgagcaggtcggctcacaaggaaaagcacttaatacccaatatcaaggagcc
tcaacggcttacaagtctttgcagctgacatggtttcaaggtcaggctgctattttagct
agagagttaaaaccccatgagccatgcccagtttgtggcagttcggcccatcctcaaccc
gcggtgagccatgaggagttgccaacggatctacaattgcaagcggcgcaggatgccgag
gccttggcgctcgataatctcaataaagcgcggacagaatatcgcgggctgcaaaagcaa
ttagaagcacagcaacagcaggcgaatgagctggcaacagcccttggtgataaggttgag
ttgtcgcttgaatcccatcgccaaacgttagacgaactgacactgcaagccaaacaggca
gacgctgcggcgcaagcgctacagcagttacaggaacagatcaaaaccttgcaacagcaa
gagtcgacattgacgcagcaattagaacttgagcgtgagcgttaccgtgaacaagaaggt
aaagtcgagcgcttatcgggtcaatttgcggaaaaagcgctgcggatcccagaggaatac
cgaacactggaggtattgaatcaagcgattgcagataatcagcagcaactcgagcagata
aaacgtcagattgatgcgctcagagccgcgcagcagcaggcggcgcagcagagtgtggcg
gcgcaaacggcattgtcggcggcgatagagcattgtaatggcgcggcagatctgcaggtg
caagcacagcaggcactattagcggcgctggataatgcaggctttaccgatagagatgca
ttgcgcgaggccttattaacggatgagcaaatgcaggcgctagctgagggcatagagacc
tatcataggcagtgctccttaaatcagtcgcaactgactcagcttaaaaccaagttgagc
gagtcgacatcacccgatcttgatgctttagaggccttgctcacggagcgactcgcacag
cttaaaacggcggaagaggtatggagtcaactcaacactcggctcaccctacttaacaat
acccaaactcagctggcgattgttgatcaaaaggccaaatcccttgaggatgaatacgct
gtgattggcactttggccgatgttgccaatggtaataccggcaacaaaatttccctgcaa
cgctttgtactcagcgtattgctcgacgatgtgttacttgcggcaacgcagaggctgcat
ttaatgagtaaagggcgctaccgattattgcgcaaggaagacagagctaagggcaataag
gcttcagggctggagcttgaagtcgaggatgcctacacctctaaagtgcgtcccgtggcg
accttaagtggtggtgagagttttatggcggccttgtcgatggccttgggcttatcggat
gtggttcaagcctacgctggggggataaaactcgataccttatttatcgacgaaggcttt
ggtagcttagatcaggactcactcgaacttgccattcgaaccctaatggatttgcagtcg
gcgggcaggatgattggggtgatttcccatgtgtctgaaatgaaagagcagataggcacc
cgaattgatatcttgaaaacctcccatgggagtgaaatcaaggtgattttgccttag
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