Shewanella sp. ANA-3: Shewana3_2800
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Entry
Shewana3_2800 CDS
T00428
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
shn
Shewanella sp. ANA-3
Pathway
shn03030
DNA replication
shn03430
Mismatch repair
shn03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
shn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Shewana3_2800
03430 Mismatch repair
Shewana3_2800
03440 Homologous recombination
Shewana3_2800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
shn03032
]
Shewana3_2800
03400 DNA repair and recombination proteins [BR:
shn03400
]
Shewana3_2800
Enzymes [BR:
shn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Shewana3_2800
DNA replication proteins [BR:
shn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Shewana3_2800
DNA repair and recombination proteins [BR:
shn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Shewana3_2800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
DUF655
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
ABK49027
LinkDB
All DBs
Position
1:complement(3344158..3347634)
Genome browser
AA seq
1158 aa
AA seq
DB search
MSDPRFVHLRVHSDFSMSDGVAKVKPILAQVEAKGMAAVALTDQNNLCGLVKFYGGCHGA
GIKPIIGADFWMQVPGFDGEFCALTIIAMNNDGYQNLTQIISQAYLRGHVQGRVVIDQEW
LVTYNEGILLLSGGREGDVGKALLKGNNTQVESLCEFYQQHFEGRYYLELLRTGRTDEER
YLHMAVGLAQEKGIPVVATNQVVFLKPEDFESHEIRVAIHDGFTLADPRRPKKYSEQQYL
RSEEEMCELFADIPAALENTVEIAKRCNVTIRLYEYFLPNFPTGDMSIEDYLVDCSKKGL
EERLEFLFPDPQVRAERRGEYDERLDVELKVINQMGFPGYFLIVMEFIQWGKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE
LYGREAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPEPGMTLAKAFEVEPA
LQESYDADEDVKDLIDMCRKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDAEGKNPVTQ
FDKNDVETAGLVKFDFLGLRTLTIVDWALEMINKVEVKNGRPPVRIEAIPLDDPASFRLL
QRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIERKHGREE
VSYPDSQYQHESLKELLSPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRGTFKEGAIKNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPS
QFMAAVMSADMDNTDKIVTLVDECERMGLTIIPPDVNKGLFKFTVDDDLRIVYGIGAIKG
VGEGPVESILEARKDGPFKDLFDFCARIDLKKLNKRVIEKLICAGALDALGPHRASMMAT
LPEAISAADQHAKAEAIGQHDMFGLLNSDPEDSKQQFVECTPWPDKIWLEGERETLGLYL
TGHPINQYLKELKHYTSGRLKDVHPTDRGKTVKAAGLVVATRVMLTKRGSKMGLLTLDDK
SARLEVMLFTEAFEKFNHLLEKDRILICEGEVSFDDFAGGNRMTARNIIDISEARSHFAS
ALEIDLDASQLTPSVLESIEQSISPWRNGAVPVVINYSQAQAKGQFRLAENWRVNPSDEL
VFALESLLGPNKVRILFP
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgtccgatcctcgttttgtgcatcttcgtgtccacagtgacttttctatgtccgatggt
gtggctaaggtcaaacccatcctcgcccaagttgaggcgaagggcatggccgcggtggca
ttaacagatcaaaacaacctctgtggtctggtcaagttttatggtggttgccatggggcg
gggatcaagccgattatcggcgcagacttttggatgcaagtgccggggtttgatggcgag
ttttgtgccttaaccattattgcgatgaataatgatggctatcaaaacctcactcaaatc
atcagccaagcctatttacgtggccatgttcaagggcgcgtggtgattgaccaagagtgg
cttgtgacctacaacgaaggcattttgctgctgtctggtggccgagaaggggacgtgggt
aaggcgctgctaaagggcaacaatacacaagttgagtccttatgcgagttttatcagcag
cattttgaagggcgttattacctcgagttattgcgtacgggacgcaccgatgaggagcgt
tacctgcatatggcggtgggactggcgcaggaaaagggcatccctgtggtggccaccaat
caggtggtgtttttaaaacccgaagactttgaatcccacgagatccgtgtggcgattcac
gatggttttacgcttgccgatccccgccgtcctaaaaaatatagcgagcaacagtacctt
cgcagcgaagaggaaatgtgcgagctgtttgccgacattccggccgcgctcgaaaatacc
gttgaaattgccaagcgctgcaacgttaccattcgcttatacgaatacttcttaccgaac
ttccccaccggcgatatgtcgattgaggattatctggttgattgctctaagaaggggctt
gaagagcgtttagagttcttattccccgatccacaagtgcgcgctgagcgccgcggtgaa
tatgacgagcgtctcgatgtcgagcttaaggttatcaaccagatgggcttccccggttac
ttcctgatcgtaatggagtttatccagtggggtaaggataacggcattcccgtggggcca
ggccgtggttcgggcgcaggctcgcttgtggcctatgcccttaaaattaccgacttagac
cccctcgaattcgacctgctgttcgaacgattcctcaacccagagcgggtatctatgccc
gacttcgacgtcgacttctgtatggatagacgcgatgaggtaattgaccacgtggccgaa
ctctacggccgtgaggcggtatcgcagatcattaccttcggtaccatggcggccaaggcg
gttatccgcgacgtgggtcgtgtgctcggccatccctatggctttgtggaccgtatttct
aagttgattccgccagagcctggcatgacgctcgccaaggcctttgaggtggagcctgcg
ctgcaggagtcctacgatgccgatgaggatgtgaaagatcttatcgacatgtgccgcaaa
ctcgagggtgtgacccgtaacgctggtaagcacgcggggggcgtggtgattgcgcccacc
aagatcaccgacttctcgccgctttactgcgatgcggaagggaaaaacccggtaacccag
ttcgataagaacgacgtggaaaccgctggcttagtcaaattcgacttcttgggattaaga
accctcaccatcgtcgactgggcgctggagatgatcaacaaggtggaggttaaaaacggc
cgtccaccagtgcggattgaggcgattcccctagacgatccagcttcgttccgcttgctg
caacgctatgaaaccactgcggtattccagctcgaatcccgtggtatgaaggatttgatt
aagcgtctgcaacccgactgtttcgaagatatgatcgcactcgtggcactgttccgcccg
gggcccctgcaatcgggcatggtggataactttatcgagcgtaagcatggtcgtgaagag
gtgtcttatcccgattctcaataccagcatgaatccttgaaggagctgttgtcgcccacc
tacggcattattttgtaccaagagcaggtgatgcagattgcgcaggtgctatcgggttat
accttaggtggcgctgacatgctgcgccgtgctatgggtaagaaaaagcctgaggagatg
gccaaacagcgcggtacctttaaagaaggggcgattaagaacggcgtcgatggcgagttg
gcgatgaagatcttcgacttagtggaaaagtttgccggctacggctttaacaaatcccac
tccgccgcgtacgcgctcgtgtcctatcaaaccctgtggctcaagactcactttccctcg
cagtttatggcggcggtaatgtccgccgatatggataacacagacaaaatcgtcacccta
gtggatgaatgtgagcgtatgggactcaccattattccgccggatgtgaacaaaggtctg
tttaagtttaccgtcgatgatgatctgcgtatcgtctatggcatcggcgccatcaaaggt
gtgggtgaggggccggttgagtcgattttagaggcgcgtaaggacggcccctttaaagac
ttattcgacttttgtgcccgtatcgatcttaaaaaacttaacaagcgggtgattgaaaag
cttatctgcgctggcgccttagatgcgcttgggccgcaccgcgcctctatgatggccacc
ttgcctgaggcgataagcgccgccgatcagcacgctaaggccgaggccatcggtcagcat
gatatgtttggtctgctcaatagtgacccagaggacagcaagcagcagtttgtcgaatgc
actccgtggcccgataaaatttggctcgaaggggagcgcgagaccttaggtctatattta
accggtcacccgattaatcaataccttaaagagcttaagcattacacttccgggcgctta
aaggacgtgcatccaaccgatcgcggcaaaaccgttaaggcggcaggccttgtggtggct
acccgggtaatgctcactaagcgtggctcaaaaatgggtctgctgaccttagatgataag
agtgcgcgccttgaggtgatgctctttaccgaagcttttgagaagtttaaccatctgctc
gagaaggacaggatcctgatctgcgaaggtgaagtaagcttcgatgattttgccggtggc
aaccgcatgacggcgcgtaatattatcgatatcagcgaggcgcgtagccactttgccagc
gccttagaaatcgatttagacgcatcgcagctaacgcctagcgtgctcgaaagtatcgag
cagtcgataagtccgtggcgcaatggcgccgtgcctgtagtgattaactacagtcaagcg
caggctaaaggccaatttaggttggcggaaaattggcgagtcaaccccagtgatgaattg
gtgtttgcccttgagagcctgcttgggcctaataaggtgcggatcctgttcccctaa
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